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View Structure Prediction Details

Protein: rnr-1
Organism: Caenorhabditis elegans
Length: 788 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rnr-1.

Description E-value Query
Range
Subject
Range
gi|157774649 - gi|157774649|ref|XP_001665390.1| hypothetical protein CBG10154 [Caenorhabditis briggsae AF16]
gi|187031585, gi... - gi|39590889|emb|CAE65263.1| Hypothetical protein CBG10154 [Caenorhabditis briggsae], gi|187031585|em...
965.0 [0..1] [788..1]

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Predicted Domain #1
Region A:
Residues: [1-788]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRYNSTYVV KRDGRKEDVH FDKITSRIQK LSYGLNMDFV DPVAVAIKVI SGLYKGVTTV  60
   61 ELDNLAAETA ASMTTQHPEY ALLAARIAVS NLHKKTNKVF SEVMKTLHEF HHPHTGKHAP 120
  121 MISDETWAII EKNADKLNSA IVYDRDYSYT YFGFKTLERS YLLKINKEIV ERPQQMLMRV 180
  181 SIGIHGDDIT SAIETYNLMS ERYMTHASPT LFNSGTCRPQ MSSCFLLTMS EDSILGIYDT 240
  241 LKQCALISKS AGGIGLNVHK IRATGSVIAG TNGTSNGLIP MLRVYNNTAR YVDQGGNKRP 300
  301 GAFAIYLEPW HADIFEFVSL RKNTGPEEER ARDLFLALWI PDLFMKRVEK DQEWSLMCPC 360
  361 ECPGLDDCWG EEFEALYAKY EAEGRVRKTV KARKLWEHIV SNQIETGLPY ITYKDAANRK 420
  421 SNQQNLGTIK CSNLCTEIIE YSAPDEIAVC NLASIALNRY VTPEKKFDFV KLAEVTKVIT 480
  481 RNLNKIIDVN YYPVEEARNS NMRHRPIGLG VQGLADCFML MRYPFTSAEA RDLNKRIFET 540
  541 IYYAALEASC ELAELNGPYS TYEGSPVSKG QLQFDMWGVT PTDQCDWATL RKKIAKHGIR 600
  601 NSLLMAPMPT ASTAQILGNN ESIEPYTSNI YSRRVLSGDF QIVNPHMLKD LVERGLWTDE 660
  661 MKNRLIANNG SIQNIDGIPS DIKELYRTVW EISQKDIIEM AADRGAYIDQ SQSLNIHMAK 720
  721 PSYAGITSMH FYGWKKGLKT GMYYLRTKPA VNAVQFTVDK NALKTNQQAE TPATVAESQD 780
  781 EGCLMCSG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 1zyzA
Description: Structures of Yeast Ribonucloetide Reductase I
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle