YRC Public Data Repository - Protein Structure Prediction

Protein:	CE00285
Organism:	Caenorhabditis elegans
Length:	54 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00285.

Description	E-value	Query Range	Subject Range
gi\|55243554, gi\|... - gi\|58380900\|ref\|XP_310858.2\| ENSANGP00000012584 [Anopheles gambiae str. PEST], gi\|55243554\|gb\|EAA067...	89.0	[0..1]	[53..30]
gi\|108880366, gi... - gi\|157104381\|ref\|XP_001648382.1\| hypothetical protein AaeL_AAEL004060 [Aedes aegypti], gi\|108880366\|...	81.0	[0..1]	[53..1]
CG31477-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG31477 (CG31477, FBgn0051477). It is a prote...	80.0	[0..1]	[54..1]
ATP5E_ARATH - ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3	79.0	[0..4]	[49..10]
ATP5E_IPOBA - ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2	79.0	[0..4]	[49..10]
gi\|21068676 - gi\|21068676\|emb\|CAD31844.1\| putative epsilon subunit of mitochondrial F1-ATPase [Cicer arietinum]	78.0	[0..4]	[49..10]

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Predicted Domain #1

Region A:
Residues: [1-54]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAWRAAGLN YVRYSQIAAQ VVRQCTKGGA NVKKPQATLK TTAWENGKMV SKSQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits