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View Structure Prediction Details

Protein: CE00285
Organism: Caenorhabditis elegans
Length: 54 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE00285.

Description E-value Query
Range
Subject
Range
gi|55243554, gi|... - gi|58380900|ref|XP_310858.2| ENSANGP00000012584 [Anopheles gambiae str. PEST], gi|55243554|gb|EAA067...
89.0 [0..1] [53..30]
gi|108880366, gi... - gi|157104381|ref|XP_001648382.1| hypothetical protein AaeL_AAEL004060 [Aedes aegypti], gi|108880366|...
81.0 [0..1] [53..1]
CG31477-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG31477 (CG31477, FBgn0051477). It is a prote...
80.0 [0..1] [54..1]
ATP5E_ARATH - ATP synthase subunit epsilon, mitochondrial OS=Arabidopsis thaliana GN=At1g51650 PE=1 SV=3
79.0 [0..4] [49..10]
ATP5E_IPOBA - ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2
79.0 [0..4] [49..10]
gi|21068676 - gi|21068676|emb|CAD31844.1| putative epsilon subunit of mitochondrial F1-ATPase [Cicer arietinum]
78.0 [0..4] [49..10]

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Predicted Domain #1
Region A:
Residues: [1-54]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAWRAAGLN YVRYSQIAAQ VVRQCTKGGA NVKKPQATLK TTAWENGKMV SKSQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.445 g.18.1 Complement control module/SCR domain
View Download 0.445 g.18.1 Complement control module/SCR domain
View Download 0.420 b.122.1 PUA domain-like
View Download 0.407 g.18.1 Complement control module/SCR domain
View Download 0.381 g.81.1 Description not found.
View Download 0.366 a.144.1 PABC (PABP) domain
View Download 0.366 a.144.1 PABC (PABP) domain
View Download 0.289 a.5.2 UBA-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle