YRC Public Data Repository - Protein Structure Prediction

Protein:	pop8
Organism:	Schizosaccharomyces pombe
Length:	108 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pop8.

Description	E-value	Query Range	Subject Range
gi\|45198535, gi\|... - gi\|45198535\|ref\|NP_985564.1\| AFR017Cp [Ashbya gossypii ATCC 10895], gi\|44984486\|gb\|AAS53388.1\| AFR01... gi\|44984486 - gi\|44984486\|gb\|AAS53388.1\| AFR017Cp [Ashbya gossypii ATCC 10895]	155.0	[0..1]	[96..1]
gi\|50308839, gi\|... - gi\|50308839\|ref\|XP_454424.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643559\|emb\|CAG9951... gi\|49643559 - gi\|49643559\|emb\|CAG99511.1\| KLLA0E10495p [Kluyveromyces lactis]	135.0	[0..6]	[91..3]
gi\|49527205 - gi\|49527205\|emb\|CAG60843.1\| unnamed protein product [Candida glabrata] gi\|50290923, gi\|... - gi\|50290923\|ref\|XP_447894.1\| unnamed protein product [Candida glabrata], gi\|49527205\|emb\|CAG60843.1\|...	134.0	[0..10]	[91..8]
gi\|151946377 - gi\|151946377\|gb\|EDN64599.1\| RNase MRP subunit [Saccharomyces cerevisiae YJM789] POP8 - Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursor... POP8_YEAST - Ribonucleases P/MRP protein subunit POP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...	128.0	[0..5]	[91..3]

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Predicted Domain #1

Region A:
Residues: [1-108]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLHQRLKSE WSYIILEVVG GTTPIDEIDD ISLRHLITLA LNQSFGIFGS AIPIDFLHRQ  60
   61 SKFLYLRCHK EDKKKVLVAL GSYVREPEQI RLMVLHASDF PCQAVPFS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.67
Match:	2av5A
Description:	Crystal structure of Pyrococcus furiosus Pop5, an archaeal Ribonuclease P protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits