YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAP8A3.02c
Organism:	Schizosaccharomyces pombe
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAP8A3.02c.

Description	E-value	Query Range	Subject Range
gi\|73955199 - gi\|73955199\|ref\|XP_546542.2\| PREDICTED: similar to CG17807-PA [Canis familiaris]	185.0	[0..1]	[220..114]
ALKB8_BOVIN - Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8 PE=2 SV=1	183.0	[0..1]	[220..114]
gi\|109108547, gi... - gi\|109108549\|ref\|XP_001102856.1\| PREDICTED: similar to CG17807-PA isoform 2 [Macaca mulatta], gi\|109...	178.0	[0..1]	[220..114]
ALKB8_MACFA - Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis GN=ALKBH8 PE=2 SV=1	178.0	[0..1]	[220..114]
gi\|109478839, gi... - gi\|109480107\|ref\|XP_345767.3\| PREDICTED: similar to CG17807-PA [Rattus norvegicus], gi\|109478839\|ref...	175.0	[0..2]	[220..122]
gi\|114640179, gi... - gi\|114640181\|ref\|XP_001137322.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes], gi\|114...	175.0	[0..1]	[220..114]
ALKB8_MOUSE - Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus GN=Alkbh8 PE=1 SV=1	175.0	[0..2]	[221..115]
gi\|55234784, gi\|... - gi\|58394263\|ref\|XP_320626.2\| AGAP011900-PA [Anopheles gambiae str. PEST], gi\|55234784\|gb\|EAA00113.2\|...	158.0	[0..42]	[221..123]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYENMSDSF LLSDAGLEFD EALLEVDQEK DDYLDDFENW TVVPVETIEG INYYPNCLPE  60
   61 SVQRNLINNV PKELLSIYGS GKQSHLYIPF PAHINCLNDY IPSDFKQRLW KGQDAEAIIM 120
  121 QVYNPGDGII PHKDLEMFGD GVAIFSFLSN TTMIFTHPEL KLKSKIRLEK GSLLLMSGTA 180
  181 RYDWFHEIPF RAGDWVMNDG EEKWVSRSQR LSVTMRRIIE NHVFG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	2fd8A
Description:	Crystal Structure of AlkB in complex with Fe(II), 2-oxoglutarate, and methylated trinucleotide T-meA-T
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.602565963316975	bayes_pls_golite062009
catalytic activity	0.154892236593256	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: