YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC30C2.08
Organism:	Schizosaccharomyces pombe
Length:	457 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC30C2.08.

Description	E-value	Query Range	Subject Range
gi\|46137703, gi\|... - gi\|46137703\|ref\|XP_390543.1\| hypothetical protein FG10367.1 [Gibberella zeae PH-1], gi\|42546426\|gb\|E...	435.0	[0..6]	[451..4]
gi\|39975775, gi\|... - gi\|39975775\|ref\|XP_369278.1\| hypothetical protein MG06186.4 [Magnaporthe grisea 70-15], gb\|EAA53058....	429.0	[0..6]	[451..4]
gi\|67539096, gi\|... - gi\|67539096\|ref\|XP_663322.1\| hypothetical protein AN5718.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	421.0	[0..8]	[438..8]
gi\|49072026, gi\|... - gi\|71015654\|ref\|XP_758834.1\| hypothetical protein UM02687.1 [Ustilago maydis 521], ref\|XP_400302.1\| ...	418.0	[0..10]	[435..7]
gi\|114194510, gi... - gi\|115389218\|ref\|XP_001212114.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	414.0	[0..6]	[445..4]
gi\|50289527, gi\|... - gi\|50289527\|ref\|XP_447195.1\| unnamed protein product [Candida glabrata], gi\|49526504\|emb\|CAG60128.1\|... gi\|49526504 - gi\|49526504\|emb\|CAG60128.1\| unnamed protein product [Candida glabrata]	389.0	[0..10]	[437..17]
gi\|90303362, gi\|... - gi\|90303362\|gb\|EAS32993.1\| hypothetical protein CIMG_04017 [Coccidioides immitis RS], gi\|119187939\|r...	385.0	[0..7]	[448..7]
YPL260W - Putative substrate of cAMP-dependent protein kinase (PKA); green fluorescent protein (GFP)-fusion pr... YP260_YEAST - UPF0662 protein YPL260W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YPL260W PE=1 SV=... gi\|190407705 - gi\|190407705\|gb\|EDV10970.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	385.0	[0..8]	[445..11]
orf19.12313, orf... - orf19.4850 CGDID:CAL0005398 Assembly 19, Contig19-10215 (272217, 270367) CDS, reverse complemented, ... gi\|68465294, gi\|... - gi\|68465294\|ref\|XP_723346.1\| hypothetical protein CaO19.12313 [Candida albicans SC5314], gi\|68464917...	383.0	[0..6]	[453..42]
gi\|49642834 - gi\|49642834\|emb\|CAH00796.1\| KLLA0D14355p [Kluyveromyces lactis] gi\|49642834, gi\|... - gi\|50307443\|ref\|XP_453700.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642834\|emb\|CAH0079...	379.0	[0..8]	[452..8]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSYEPAEPV PVEEQPILEK LIGIRQRLAV LKRDRTRFIE KNEVFHLKDE LVEQMNLLDS  60
   61 RRSTNSTRTI VDSQLEDCLH LLSLFYLAIG RNNDLPAFFV QLGTVRRLLE YNLEGACYTQ 120
  121 NDLKPLKERL ERIRAAIVEG SKKEDASPVV VKYLNNKLAV CDRNYSEAQH NISKISPELI 180
  181 GIQTRLVSIH RQIDGFAVRP TSDPGFIDRT MEQLKEIEEM KDSNGMFCDA DHVPLQGQEL 240
  241 CNGILEECFS FLEDAKTKEG LSDEMKSSPK LQQIYHRLDE LLNKLKHLTL THRWTLRETD 300
  301 LYVYRASLAE IDSMRIDGQF LDEQGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [327-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APAGQRILLY LLRRCYAYIY QLLSSSEPVS EELMAVHNQL RTVKRCLLEV QRSGGICSER  60
   61 DLYPYQMKLA SLENLRVNGK FLASDHSVPE GQELVNSLLT QCHQLIEELR DEKHQHDIEE 120
  121 REGSENTDGN L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits