YRC Public Data Repository - Protein Structure Prediction

Protein:	snf59
Organism:	Schizosaccharomyces pombe
Length:	515 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for snf59.

Description	E-value	Query Range	Subject Range
gi\|39940932, gi\|... - gi\|39940932\|ref\|XP_360003.1\| hypothetical protein MG05378.4 [Magnaporthe grisea 70-15], gb\|EAA54586....	258.0	[0..159]	[483..3]
gi\|46108622, gi\|... - gi\|46108622\|ref\|XP_381369.1\| hypothetical protein FG01193.1 [Gibberella zeae PH-1], gi\|42544814\|gb\|E...	251.0	[0..155]	[483..14]
gi\|28923741, gi\|... - gi\|32414193\|ref\|XP_327576.1\| hypothetical protein [Neurospora crassa], gi\|28923741\|gb\|EAA32908.1\| hy... gi\|85068257 - gi\|85068257\|ref\|XP_962144.1\| hypothetical protein NCU07290 [Neurospora crassa OR74A]	249.0	[0..175]	[483..31]
RSC7_SCHPO - Chromatin structure-remodeling complex subunit rsc7 OS=Schizosaccharomyces pombe (strain 972 / ATCC ... rsc7 - RSC complex subunit Rsc7	246.0	[0..232]	[483..11]
gi\|119186993, gi... - gi\|90302889\|gb\|EAS32520.1\| hypothetical protein CIMG_03544 [Coccidioides immitis RS], gi\|119186993\|r...	238.0	[0..97]	[483..882]
gi\|88180352, gi\|... - gi\|88180352\|gb\|EAQ87820.1\| hypothetical protein CHGG_04439 [Chaetomium globosum CBS 148.51], gi\|1161...	237.0	[0..181]	[483..36]
gi\|68472878, gi\|... - gi\|68472878\|ref\|XP_719504.1\| hypothetical protein CaO19.2055 [Candida albicans SC5314], gi\|68472619\|... orf19.9602, orf1... - NPL6 CGDID:CAL0004441 Assembly 19, Contig19-10139 (116805, 115456) CDS, reverse complemented, transl...	234.0	[0..286]	[503..145]
gi\|45185188, gi\|... - gi\|45185188\|ref\|NP_982905.1\| ABL042Wp [Ashbya gossypii ATCC 10895], gi\|44980846\|gb\|AAS50729.1\| ABL04... gi\|44980846 - gi\|44980846\|gb\|AAS50729.1\| ABL042Wp [Ashbya gossypii ATCC 10895]	230.0	[0..220]	[488..119]
gi\|67527998, gi\|... - gi\|67527998\|ref\|XP_661843.1\| hypothetical protein AN4239.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	212.0	[0..114]	[483..17]
NPL6 - Component of the RSC chromatin remodeling complex; interacts with Rsc3p, Rsc30p, Ldb7p, and Htl1p to... RSC7_YEAST - Chromatin structure-remodeling complex subunit RSC7 OS=Saccharomyces cerevisiae (strain ATCC 204508 ...	208.0	[0..255]	[488..81]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEDITLEH SDDLNKEESG ESNRVNIEEP EHHDNSNKES TNLDDLNMLE EPKYHDNSNK  60
   61 ESTNLDDLNM LEEPEHHDNS KKESTNLDDS NMLEEPKHHD NSNKESTNLD DLNMSEEPKH 120
  121 HDSSNKESTN LDNSNMDESE NQKNFKIEEP KPSGDFRNEG PKQCDDSKIE KPELHVNSKI 180
  181 EEPIHRIDSE HNEPEYHTES KNEESEHNTK SIREEPIHHV DSKNEEPVYS K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [232-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPEKMGDEFS ENSLSKSDSA VKQEGNLLIH PNNSLKDTAP SKCKEPPVDE ALSKKEISDD  60
   61 IAQITSVTPI TEKIEDKDKY I

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [313-431]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEVIDTYGKL ADGFEYRAKT FCLEGRGKVL YMLGTECSRL LGFKDSYFMF HKTPSLRKVL  60
   61 TTQSERDQMV EMGLLASNFR FRQLSIVPAR QMFLAFGARI LMKGTIDPES HKALIEKNI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	62.958607
Match:	PF08624.1
Description:	No description for PF08624.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [432-515]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SWADDEYYHM DVMANGSTRS SSVKLELKSM DNQNSPSPFQ GKDILTLAQG ASFYNSKVMR  60
   61 TRNLRKEARL SYYTKLRGVN RSVS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits