YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBPB2B2.08
Organism:	Schizosaccharomyces pombe
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBPB2B2.08.

Description	E-value	Query Range	Subject Range
gi\|42550945, gi\|... - gi\|46122471\|ref\|XP_385789.1\| hypothetical protein FG05613.1 [Gibberella zeae PH-1], gi\|42550945\|gb\|E...	291.0	[0..25]	[214..28]
gi\|85107778 - gi\|85107778\|ref\|XP_962444.1\| hypothetical protein NCU07928 [Neurospora crassa OR74A] gi\|32416312, gi\|... - gi\|32416312\|ref\|XP_328634.1\| hypothetical protein [Neurospora crassa], gi\|28924050\|gb\|EAA33208.1\| co...	290.0	[0..23]	[214..37]
gi\|38106115, gi\|... - gi\|39940166\|ref\|XP_359620.1\| hypothetical protein MG05157.4 [Magnaporthe grisea 70-15], gb\|EAA52465....	286.0	[0..23]	[214..41]
gi\|67521608, gi\|... - gi\|67521608\|ref\|XP_658865.1\| hypothetical protein AN1261.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	269.0	[0..14]	[217..45]
gi\|116196898, gi... - gi\|88180960\|gb\|EAQ88428.1\| hypothetical protein CHGG_05047 [Chaetomium globosum CBS 148.51], gi\|1161...	251.0	[0..26]	[214..39]
gi\|49655194, gi\|... - gi\|50421935\|ref\|XP_459526.1\| hypothetical protein DEHA0E05500g [Debaryomyces hansenii CBS767], gi\|49...	221.0	[0..7]	[216..6]
gi\|159131138 - gi\|159131138\|gb\|EDP56251.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|70995245, gi\|... - gi\|70995245\|ref\|XP_752384.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668500...	210.0	[0..30]	[212..80]
gi\|83774078 - gi\|83774078\|dbj\|BAE64203.1\| unnamed protein product [Aspergillus oryzae] gi\|169781746 - gi\|169781746\|ref\|XP_001825336.1\| hypothetical protein [Aspergillus oryzae RIB40]	210.0	[0..26]	[214..55]
gi\|111061563, gi... - gi\|169614415\|ref\|XP_001800624.1\| hypothetical protein SNOG_10348 [Phaeosphaeria nodorum SN15], gi\|11...	175.0	[0..27]	[217..87]
gi\|71021125, gi\|... - gi\|71021125\|ref\|XP_760793.1\| hypothetical protein UM04646.1 [Ustilago maydis 521], ref\|XP_402261.1\| ...	153.0	[0..75]	[205..187]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVQHKTAKI EEDHGLFQPI LRPSDISKTT DTKFIQSSPY IEKEHWLDLG TLSVGHYFLS  60
   61 LALQTFVPKD SV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [73-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYAHLPYAQA FDIAEIVNLI REYSHKYHKH IPAFSAYIVA FRSVLQPEVQ VSPEARHKLA  60
   61 EIDKGSHLEA NVSGGLLKYW YGIPDDVFGQ NLATCWWTSK ESARLGGAGK IHREGLKAVR 120
  121 GWYKNWKIEE YELEVIEGGS SYIFKGLS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.2
Match:	2go8A
Description:	No description for 2go8A was found.

Predicted functions:

Term	Confidence	Notes
binding	0.464852208350626	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: