YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBPB2B2.08
Organism:	Schizosaccharomyces pombe
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBPB2B2.08.

Description	E-value	Query Range	Subject Range
gi\|42550945, gi\|... - gi\|46122471\|ref\|XP_385789.1\| hypothetical protein FG05613.1 [Gibberella zeae PH-1], gi\|42550945\|gb\|E...	291.0	[0..25]	[214..28]
gi\|85107778 - gi\|85107778\|ref\|XP_962444.1\| hypothetical protein NCU07928 [Neurospora crassa OR74A] gi\|32416312, gi\|... - gi\|32416312\|ref\|XP_328634.1\| hypothetical protein [Neurospora crassa], gi\|28924050\|gb\|EAA33208.1\| co...	290.0	[0..23]	[214..37]
gi\|38106115, gi\|... - gi\|39940166\|ref\|XP_359620.1\| hypothetical protein MG05157.4 [Magnaporthe grisea 70-15], gb\|EAA52465....	286.0	[0..23]	[214..41]
gi\|67521608, gi\|... - gi\|67521608\|ref\|XP_658865.1\| hypothetical protein AN1261.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	269.0	[0..14]	[217..45]
gi\|116196898, gi... - gi\|88180960\|gb\|EAQ88428.1\| hypothetical protein CHGG_05047 [Chaetomium globosum CBS 148.51], gi\|1161...	251.0	[0..26]	[214..39]
gi\|49655194, gi\|... - gi\|50421935\|ref\|XP_459526.1\| hypothetical protein DEHA0E05500g [Debaryomyces hansenii CBS767], gi\|49...	221.0	[0..7]	[216..6]
gi\|159131138 - gi\|159131138\|gb\|EDP56251.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|70995245, gi\|... - gi\|70995245\|ref\|XP_752384.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668500...	210.0	[0..30]	[212..80]
gi\|83774078 - gi\|83774078\|dbj\|BAE64203.1\| unnamed protein product [Aspergillus oryzae] gi\|169781746 - gi\|169781746\|ref\|XP_001825336.1\| hypothetical protein [Aspergillus oryzae RIB40]	210.0	[0..26]	[214..55]
gi\|111061563, gi... - gi\|169614415\|ref\|XP_001800624.1\| hypothetical protein SNOG_10348 [Phaeosphaeria nodorum SN15], gi\|11...	175.0	[0..27]	[217..87]
gi\|71021125, gi\|... - gi\|71021125\|ref\|XP_760793.1\| hypothetical protein UM04646.1 [Ustilago maydis 521], ref\|XP_402261.1\| ...	153.0	[0..75]	[205..187]

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Predicted Domain #1

Region A:
Residues: [1-72]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVQHKTAKI EEDHGLFQPI LRPSDISKTT DTKFIQSSPY IEKEHWLDLG TLSVGHYFLS  60
   61 LALQTFVPKD SV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [73-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYAHLPYAQA FDIAEIVNLI REYSHKYHKH IPAFSAYIVA FRSVLQPEVQ VSPEARHKLA  60
   61 EIDKGSHLEA NVSGGLLKYW YGIPDDVFGQ NLATCWWTSK ESARLGGAGK IHREGLKAVR 120
  121 GWYKNWKIEE YELEVIEGGS SYIFKGLS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.2
Match:	2go8A
Description:	No description for 2go8A was found.

Predicted functions:

Term	Confidence	Notes
binding	0.464852208350626	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: