| Protein: | SPBC3E7.09 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 659 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC3E7.09.
| Description | E-value | Query Range |
Subject Range |
|
|
356.0 | [0..38] | [598..12] |
|
|
354.0 | [0..33] | [570..107] |
|
|
349.0 | [0..57] | [576..100] |
|
|
333.0 | [0..41] | [353..235] |
|
|
331.0 | [0..41] | [454..319] |
|
Region A: Residues: [1-146] |
1 11 21 31 41 51
| | | | | |
1 MVKRRLSAFG NAFLIYFIIF RLCCCSPQTS HWCKYPALCL KSPDTHNENL VCDAYLSVIA 60
61 TKSEEKEASN PTTWDFTPTN KYQEPSFHTK TSLNGSDTIS SNFLSKYEYS NGTSTSEFID 120
121 SISPPLVNET STISSSKKLE QNYSVT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [147-325] |
1 11 21 31 41 51
| | | | | |
1 EVIDTNIITS SSVTLPISED GSSTSAAATI DSNIDEKTVA FSEEKRFNFA STDCAAAVIK 60
61 TNPEAVGSSS ILTENKDKYM LNKCSAENKF VVIELCEDIY VDTVQIANFE FFSSIFRDFK 120
121 VSVSGKYPKY ESSWMELGTF TALNLRTLQS FHIENPLIWA KYLKIEFLTH YGSEFYCPV
|
| Detection Method: | |
| Confidence: | 1.47 |
| Match: | 1tvgA |
| Description: | X-ray structure of human PP25 gene product, HSPC034. Northeast Structural Genomics Target HR1958. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0068322171970982 | bayes_pls_golite062009 |
|
Region A: Residues: [326-576] |
1 11 21 31 41 51
| | | | | |
1 SLLRVYGKTM IEEFEEANED FLEQKVNDGS AIKADEIRKP QESPIFVDEE DTDVQSKPVR 60
61 KNPSVELNST DTLLSSTVIS KSLSTVVIGN ETGKSESYPA TSTRSFNDIS PSSSSSYSTA 120
121 QISTFPSNQE SIYKNINKRL STLEERKKAF DEIVEKILTN YGKHNAKNMN FTQLLHELNS 180
181 TLQLEISKLS KSVVKPSLFA LQAKLELLSA ENEYFQSQIT SLYQESSFQK RLLMLQLTVL 240
241 IVLTVYMAVS R
|
| Detection Method: | |
| Confidence: | 4.39794 |
| Match: | 1dg3A |
| Description: | Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [577-659] |
1 11 21 31 41 51
| | | | | |
1 LPENLPTTRS SSNNPIEASR PPFSRDEQDI SKANDFRVSA SSAVYTVGPE LLQRKKRDPN 60
61 TSIRSIHERE QDKIIHSRSH SVC
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.399 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.265 | a.4.1 | Homeodomain-like |
| View | Download | 0.305 | b.40.4 | Nucleic acid-binding proteins |
| View | Download | 0.312 | d.120.1 | Cytochrome b5 |
| View | Download | 0.286 | b.40.4 | Nucleic acid-binding proteins |
