YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC18H10.09
Organism:	Schizosaccharomyces pombe
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC18H10.09.

Description	E-value	Query Range	Subject Range
gi\|46135893, gi\|... - gi\|46135893\|ref\|XP_389638.1\| hypothetical protein FG09462.1 [Gibberella zeae PH-1], gi\|42553507\|gb\|E...	480.0	[0..2]	[423..294]
gi\|145013884, gi... - gi\|39968817\|ref\|XP_365799.1\| hypothetical protein MGG_02501 [Magnaporthe grisea 70-15], gb\|EAA54516....	477.0	[0..2]	[423..283]
gi\|40745909, gi\|... - gi\|67522887\|ref\|XP_659504.1\| hypothetical protein AN1900.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	476.0	[0..4]	[424..288]
gi\|32406919, gi\|... - gi\|32406919\|ref\|XP_324070.1\| hypothetical protein [Neurospora crassa], gi\|28921728\|gb\|EAA31008.1\| co... gi\|85096352 - gi\|85096352\|ref\|XP_960244.1\| hypothetical protein NCU04713 [Neurospora crassa OR74A]	456.0	[0..2]	[428..316]
gi\|23613818, gi\|... - gi\|23613818\|ref\|NP_704839.1\| hypothetical protein [Plasmodium falciparum 3D7], gi\|23505201\|emb\|CAD51...	361.0	[0..19]	[422..454]
gi\|46227979 - gi\|46227979\|gb\|EAK88899.1\| C- terminal region conserved, zinc finger, myb DNA binding domain [Crypto... gi\|66358710 - gi\|66358710\|ref\|XP_626533.1\| C- terminal region conserved, zinc finger, myb DNA binding domain [Cryp...	298.0	[0..110]	[422..375]
gi\|116202655, gi... - gi\|88177730\|gb\|EAQ85198.1\| hypothetical protein CHGG_09212 [Chaetomium globosum CBS 148.51], gi\|1162...	288.0	[0..2]	[423..283]
gi\|67622075 - gi\|67622075\|ref\|XP_667794.1\| hypothetical protein [Cryptosporidium hominis TU502] gi\|54658962 - gi\|54658962\|gb\|EAL37567.1\| hypothetical protein Chro.20367 [Cryptosporidium hominis]	286.0	[0..110]	[422..363]
gi\|49648541, gi\|... - gi\|50550401\|ref\|XP_502673.1\| YALI0D10857p [Yarrowia lipolytica], gi\|49648541\|emb\|CAG80861.1\| unnamed... gi\|49648541 - gi\|49648541\|emb\|CAG80861.1\| YALI0D10857p [Yarrowia lipolytica]	279.0	[0..4]	[423..388]
ctg02_4\|15295\|Zinc - finger protein, putative gi\|159117751, gi... - gi\|71079479\|ref\|XP_778822.1\| hypothetical protein GLP_68_37985_35016 [Giardia lamblia ATCC 50803], g... GL50803_15295 - \| organism=Giardia_Assemblage_A_isolate_WB \| product=Zinc finger domain protein \| location=GLCHR01:1...	270.0	[0..132]	[425..659]

Back

Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTAMNKYVE TAFQNQKTTL TSLFNYLLQN WKSFETCNTK ERELMVQQVD SKKPETPTDL  60
   61 EPLANKLEGP LSERVHLNTT LDYEVLRGQN HCQKQNTTQT KTTISGSEQL FNDEKPKKII 120
  121 YSKGGNDGKE DDLQNVNEPQ DAYSNDHDIQ SKDTELLGNE YCLEWKNPHL TNVGTLKAPI 180
  181 LRLVIKCVRC HYGSEISIAT KFSLVCNKCS NTLRLVWVPG VIHPNNARLG ILHTLGCVPV 240
  241 DVMPIDCQVS CMECVDEQIT SFKGISSMQP MLQFCKVCKN RILVEHQDTE FHLLKQRQSS 300
  301 MGGKVSAKKK QKQNLNITK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.2
Match:	1dvpA
Description:	Hrs
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.561606449522564	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [320-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLPLPNNGAC EHYKKSFRWF RFSCCDRVYP CDECHDADQN HTFEHANRII CGYCAMESFY  60
   61 KKDATCPHCG NMTVKKQTSA YWEGGKGMRD RVRMSRKDPR KYKRKHHGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2dktA
Description:	No description for 2dktA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.19281665757616	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: