YRC Public Data Repository - Protein Structure Prediction

Protein:	cbf12
Organism:	Schizosaccharomyces pombe
Length:	963 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cbf12.

Description	E-value	Query Range	Subject Range
gi\|109500655 - gi\|109500655\|ref\|XP_001053777.1\| PREDICTED: similar to recombining binding protein suppressor of hai...	710.0	[0..444]	[948..7]
gi\|93279465 - gi\|93279465\|pdb\|2F8X\|C Chain C, Crystal Structure Of Activated Notch, Csl And Maml On Hes-1 Promoter...	709.0	[0..445]	[948..1]
gi\|30411012, gi\|... - gi\|74203217\|dbj\|BAE26281.1\| unnamed protein product [Mus musculus], gi\|30411012\|gb\|AAH51387.1\| Recom...	703.0	[0..437]	[948..1]
gi\|73951596 - gi\|73951596\|ref\|XP_536269.2\| PREDICTED: similar to recombining binding protein suppressor of hairles...	701.0	[0..444]	[948..7]
SUH_PONPY - Recombining binding protein suppressor of hairless - Pongo pygmaeus (Orangutan) SUH_PONAB - Recombining binding protein suppressor of hairless OS=Pongo abelii GN=RBPJ PE=2 SV=1	701.0	[0..444]	[948..7]
gi\|109073928 - gi\|109073928\|ref\|XP_001084065.1\| PREDICTED: similar to recombining binding protein suppressor of hai...	697.0	[0..444]	[948..7]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPNVQKRPS SEDIKTQEFY DSTRNIRRVA TAIGSINANL ESPQLYSLAK STSLQEPVRI  60
   61 YGDSVSPAIS SSKAHSTSSV SPYYSEKNES QALNADGTAF ANPSFHSFG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [110-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPQEDSQDNT QTYSTPYTTM NPSNEMHPYP PATFENNYSV LPDHSSQPNA YSFTGSNILP  60
   61 TQSPSLNQMQ DYQNLQQNGS SNTTIPSFSS QHDLSQGLTH QPVPNHDEYA FSYPYELQRK 120
  121 PLIPAHPVPS FRPTSALKVN MNSNVPSSDS VRNSSPNQYY ASTSKQSIPS QSQN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [284-448]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQPPQKASVL GTVNNYRQYQ NSFISLNDYQ AAQSNISSPS SRFPTPYSPS VPFGTYQEKE  60
   61 KSYSQDHAEL SYYQQSPSMM PPYDRSSVYF QQPLSRTDVP NQSFQQYPTT VDGGSMIPNL 120
  121 YPTSAEQMGL YPQDSQNKDT YPKSLVNRPS SAVCEPARND SIPMM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.045757
Match:	1m2vB
Description:	Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [449-963]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VYSQPVTIEQ RIQYVLSNCH CLSAFYLCMP SLCQKSYGTE RRYLCPPIVL YLLGTTWLNN  60
   61 VTDNLKISAQ TLEDKDNPKF AKNIFYYNAD GALISPETDI AKSTYQLTNY NENTNFDSFP 120
  121 VWGNALLKTI YYTGQGKNDG FGRSTFLQLS VQSKTKYFKL ENLRLGVISK PSQKRALMKV 180
  181 SDMSIRHGDC VCLFNRYRAQ HNNALFLGTS NVQRAISKVS LNMKYNSNYF PTTDAPNDAE 240
  241 NEGAGLAMAN NLWEPFYIFS VDELNKGNNS NPSDSRSKVL CSNMVIILVS KITGVQSPPL 300
  301 ILKKHDNWKV SLSSRAPSEA INCLSKLAFQ CHETKRFLYI DEKQSSEISF TSGELEYSDP 360
  361 NDPTKATHSV LPWSAMWSII STQSVRTMFY NEPIHQNAFH VVPSMPFVKF IRLDENSMFH 420
  421 IYGTGFANDV QIWMAYTRCE VKSINAFKPD TTLPPDIISD SRFSSRVYAC TANLIELICE 480
  481 IPVCMFEPTV ELSPILLFQY ETLFHSGYKW PLESH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2f8xC
Description:	No description for 2f8xC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits