YRC Public Data Repository - Protein Structure Prediction

Protein:	arb1
Organism:	Schizosaccharomyces pombe
Length:	399 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arb1.

Description	E-value	Query Range	Subject Range
gi\|7490795 - gi\|7490795\|pir\|\|T37635 hypothetical protein SPAC13F5.10 - fission yeast (Schizosaccharomyces pombe)	642.0	[0..1]	[399..1]
gi\|32411381, gi\|... - gi\|32411381\|ref\|XP_326171.1\| hypothetical protein [Neurospora crassa], gi\|28924187\|gb\|EAA33342.1\| pr... gi\|85108457 - gi\|85108457\|ref\|XP_962578.1\| hypothetical protein NCU06316 [Neurospora crassa OR74A]	494.0	[0..39]	[399..77]
gi\|46121237, gi\|... - gi\|46121237\|ref\|XP_385173.1\| hypothetical protein FG04997.1 [Gibberella zeae PH-1], gi\|42551255\|gb\|E...	469.0	[0..25]	[399..44]
gi\|88180247, gi\|... - gi\|88180247\|gb\|EAQ87715.1\| hypothetical protein CHGG_04334 [Chaetomium globosum CBS 148.51], gi\|1161...	301.0	[0..32]	[399..53]
gi\|38104763, gi\|... - gi\|39949733\|ref\|XP_363221.1\| hypothetical protein MG08805.4 [Magnaporthe grisea 70-15], gb\|EAA51283....	262.0	[0..19]	[216..207]
gi\|90298312, gi\|... - gi\|90298312\|gb\|EAS27943.1\| hypothetical protein CIMG_09147 [Coccidioides immitis RS], gi\|119174330\|r...	215.0	[0..28]	[399..78]
gi\|115387597, gi... - gi\|115387597\|ref\|XP_001211304.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	201.0	[0..36]	[396..41]
gi\|159126765 - gi\|159126765\|gb\|EDP51881.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|66851141, gi\|... - gi\|70997519\|ref\|XP_753505.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668511...	174.0	[0..40]	[396..72]
gi\|111057575 - gi\|111057575\|gb\|EAT78695.1\| hypothetical protein SNOG_14070 [Phaeosphaeria nodorum SN15]	160.0	[0..23]	[399..152]

Back

Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGDFKNDS TGCIGDSVEF TTFKKRTGKS LGNRRKKRGL SGWEPYFQEP ELTAEEKLEN  60
   61 ETLYSRNIPL TVRMERFIQR YRSRRKWSDP TRIRLFTMYL DLGGVSTGQK QFTGGTDINN 120
  121 DAKAREVSAQ TTTDYIEYDI LDEYDIDFKW VAGVFLSSHI LYNA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [165-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLTKEEDLQI ACQIVRNFLL SVLHNNVAPE FEDNIRDACL LAEQAETELI SNKRLSTKLP  60
   61 GRLQRALASI HVDNYKGLWD KSQSDRTSDS SVNFIESNNT KFMP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.872	N/A	N/A	a.24.17	Group V grass pollen allergen

Predicted Domain #3

Region A:
Residues: [269-399]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDELFEPDGI SRFSTQQARD YIQRTLGPRY LTGKVVEQEY LTVKLVSKTL LNFSNQSLCK  60
   61 AVFIVWDPPG SKYSQDTNKE RLEVILESDL LNNTVDGTHL EGSFTFLDNG LTILDTVLAV 120
  121 LPTFYEEVKD E

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.813	d.108.1	Acyl-CoA N-acyltransferases (Nat)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits