YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC323.08
Organism:	Schizosaccharomyces pombe
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC323.08.

Description	E-value	Query Range	Subject Range
gi\|44985707 - gi\|44985707\|gb\|AAS54331.1\| AGL160Wp [Ashbya gossypii ATCC 10895] gi\|45200937, gi\|... - gi\|45200937\|ref\|NP_986507.1\| AGL160Wp [Ashbya gossypii ATCC 10895], gi\|44985707\|gb\|AAS54331.1\| AGL16...	167.0	[0..1]	[128..19]
gi\|40738645, gi\|... - gi\|67540650\|ref\|XP_664099.1\| hypothetical protein AN6495.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	164.0	[0..8]	[155..10]
gi\|85109445 - gi\|85109445\|ref\|XP_962920.1\| hypothetical protein NCU06204 [Neurospora crassa OR74A] gi\|28924564, gi\|... - gi\|32411157\|ref\|XP_326059.1\| predicted protein [Neurospora crassa], gi\|28924564\|gb\|EAA33684.1\| predi...	162.0	[0..45]	[200..189]
gi\|68467478, gi\|... - gi\|68467478\|ref\|XP_722172.1\| hypothetical protein CaO19.4962 [Candida albicans SC5314], gi\|68467245\|... orf19.12427, orf... - orf19.4962 CGDID:CAL0006360 Assembly 19, Contig19-10216 (122280, 121078) CDS, reverse complemented, ...	153.0	[0..2]	[156..32]
gi\|46111237, gi\|... - gi\|46111237\|ref\|XP_382676.1\| hypothetical protein FG02500.1 [Gibberella zeae PH-1], gi\|42544391\|gb\|E...	143.0	[0..2]	[178..15]
RMP1_YEAST - Ribonuclease MRP protein subunit RMP1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RM... gi\|190406173 - gi\|190406173\|gb\|EDV09440.1\| protein component of RNase MRP complex [Saccharomyces cerevisiae RM11-1a... RMP1 - Subunit of RNase MRP, which processes pre-rRNA and has a role in cell cycle-regulated degradation of...	142.0	[0..1]	[135..8]
gi\|39953413, gi\|... - gi\|39953413\|ref\|XP_363983.1\| predicted protein [Magnaporthe grisea 70-15], gb\|EAA46485.1\| hypothetic...	130.0	[0..4]	[207..19]
gi\|19068973, gi\|... - gi\|19074331\|ref\|NP_585837.1\| hypothetical protein ECU06_0810 [Encephalitozoon cuniculi GB-M1], gi\|19... gi\|19074331 - gi\|19074331\|ref\|NP_585837.1\| hypothetical protein ECU06_0810 [Encephalitozoon cuniculi GB-M1]	125.0	[0..4]	[91..15]
gi\|49528861, gi\|... - gi\|50294271\|ref\|XP_449547.1\| hypothetical protein CAGL0M04587g [Candida glabrata CBS138], gi\|4952886... gi\|49528861 - gi\|49528861\|emb\|CAG62523.1\| unnamed protein product [Candida glabrata]	116.0	[0..3]	[123..10]
gi\|49642949, gi\|... - gi\|50307671\|ref\|XP_453815.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642949\|emb\|CAH0091... gi\|49642949 - gi\|49642949\|emb\|CAH00911.1\| KLLA0D17072p [Kluyveromyces lactis]	113.0	[0..3]	[93..14]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQELQYDVVL LQKIVYRNRN QHRLSVWWRH VRMLLRRLKQ SLDGNEKAKI AILEQLPKSY  60
   61 FYFTNLIAHG QYPALGLVLL GILARVWFVM GGIEYEAKIQ SEIVFSQKEQ KKLELQSQDD 120
  121 IDTGTVVARD ELLATEPISL SINPASTSYE KLTVSSPNSF LKNQDESLFL SSSPITVSQG 180
  181 TKRKSKNSNS TVKKKKKRAR KGRDEIDDIF G

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits