YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC691.02c
Organism:	Schizosaccharomyces pombe
Length:	678 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC691.02c.

Description	E-value	Query Range	Subject Range
gi\|2257520 - gi\|2257520\|dbj\|BAA21414.1\| pi034 [Schizosaccharomyces pombe]	674.0	[0..37]	[678..1]
gi\|85094586 - gi\|85094586\|ref\|XP_959914.1\| hypothetical protein NCU02270 [Neurospora crassa OR74A] gi\|28921371, gi\|... - gi\|40804617\|emb\|CAF05877.1\| related to Rad50-interacting protein 1 [Neurospora crassa], gi\|32421205\|...	604.0	[0..21]	[674..68]
gi\|67537428, gi\|... - gi\|67537428\|ref\|XP_662488.1\| hypothetical protein AN4884.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	576.0	[0..55]	[674..14]
gi\|38102419, gi\|... - gi\|39973871\|ref\|XP_368326.1\| hypothetical protein MGG_00918 [Magnaporthe grisea 70-15], gb\|EAA49260....	565.0	[0..11]	[674..61]
gi\|42551032, gi\|... - gi\|46123847\|ref\|XP_386477.1\| hypothetical protein FG06301.1 [Gibberella zeae PH-1], gi\|42551032\|gb\|E...	546.0	[0..11]	[674..68]
CG8605-PA - This gene is referred to in FlyBase by the symbol Dmel\CG8605 (CG8605, FBgn0035762). It is a protein...	520.0	[0..5]	[674..46]
gi\|28893439, gi\|... - ref\|NP_796297.1\| RIKEN cDNA 1500019C06 [Mus musculus], gi\|26324646\|dbj\|BAC26077.1\| unnamed protein ...	519.0	[0..45]	[664..70]
gi\|114615281 - gi\|114615281\|ref\|XP_001146982.1\| PREDICTED: similar to RAD50-interacting protein 1 [Pan troglodytes]	512.0	[0..63]	[664..184]
gi\|73981955 - gi\|73981955\|ref\|XP_533100.2\| PREDICTED: similar to Rad50-interacting protein 1 [Canis familiaris]	512.0	[0..63]	[664..151]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSQQLIDFI DSRTRHPYKS DEVEKFQQEV NELQLPDPNS LPILSEEEKR QAREDAAFRR  60
   61 SSEGLEDAWL DSAIPADPTP IFRDTVELLC VYQSFVKKSA SLDTVANFLD FSTDFSTLST 120
  121 KKDETEIAPD CLHYIAELLF QKKEREVKEK WKNELTEKLK TLFNWPAINP NLKESSKFES 180
  181 FFGFVRSIQS FKDSETGLPL FMQVYITPYV NQFRYHFMS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [220-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKQTNVLSKP EWFFEFLLKV FRSNRSFYML MRDIKFFPGV PPFFTFINLL NNVAKEKLTH  60
   61 IIKYDDYLVH LVHETLQYSV RLEQHFHYTQ D

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [311-678]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLIIFLFEQN GTYDKWLGLE TQLSLTKLED IKIASDAWEL ESDQSDDFSS AVPTKMTVRF  60
   61 RDMIETTFSV LQNLPSLDYQ FNFWRSVQLK PMMQYVNWLE AFYESHESSS SIHLPGSLQT 120
  121 DKSKFDIAEV ERMCKLYSNF KLLMDWLDDI EDEDVYIRIG HKMGSENYAA FYQVKPRLST 180
  181 LTNGSFRMIL RAVSQTLRPL LDNYSDLDTW VIKEQLPGAA LLSTSVSAEI VGFQSRLKEI 240
  241 IALLQKLLIG SSQCEAIYQI GTLVESWMIK IVMTHQFSVR GGVQFAMDAM QIVLEFSDYP 300
  301 LLKFERLMST VELLSLESGE NKLIKKLIIE INQKNYDFID EFFKTKEITL SYEDALGVLY 360
  361 RRVDAWKD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.58
Match:	2fji1
Description:	No description for 2fji1 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits