YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC4.03c
Organism:	Schizosaccharomyces pombe
Length:	891 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC4.03c.

Description	E-value	Query Range	Subject Range
gi\|114631271 - gi\|114631271\|ref\|XP_001144755.1\| PREDICTED: SEC24-related protein C isoform 6 [Pan troglodytes]	943.0	[0..2]	[886..45]
gi\|109502099, gi... - gi\|109502099\|ref\|XP_001056270.1\| PREDICTED: similar to SEC24 related gene family, member C isoform 1...	925.0	[0..4]	[886..18]
gi\|74204998 - gi\|74204998\|dbj\|BAE20977.1\| unnamed protein product [Mus musculus]	919.0	[0..89]	[886..1]
gi\|73952949, gi\|... - gi\|73952949\|ref\|XP_862907.1\| PREDICTED: similar to SEC24-related protein C isoform 7 [Canis familiar...	911.0	[0..2]	[886..188]
gi\|76656555 - gi\|76656555\|ref\|XP_586458.2\| PREDICTED: similar to SEC24-related protein C isoform 1 [Bos taurus]	911.0	[0..2]	[886..188]
SEC24C - SEC24 family, member C (S. cerevisiae)	909.0	[0..2]	[886..187]

Back

Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYPGQFGNY GNPETYRQNV AGNIASYGGP EIDTQLAAQM NAQMYIQQGS AMAPQPRRAR  60
   61 RHKDAHAYDM SLTDAEPALA PVMSPAIPPS MNYPTPSTPS VLPESFSNDT NLLDPAALPS 120
  121 APEVRYEDQQ LFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1y0fA
Description:	No description for 1y0fA was found.

Predicted Domain #2

Region A:
Residues: [134-891]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQIFNTMEKG SPPMSTTDFV GYEQGNSSSK FVQFTSYAIP ATNDVCNASG IPLGMIVQPF  60
   61 AELRPDEAPV PVVDNTNSNP PRCKKCRGYI NPFIQFTMAS SKWTCNLCGS ENSFNDDGFN 120
  121 PLVGSQHDGV ESRPELNVGT IDFKVGKDYW IKEDPPKPAR FVFMIDVSYE ASSKGLPKVA 180
  181 AEAIRNILYG PVPLDPNVKI AIVCFDRSVN FFNLSPNLEQ PHMLAASDLE NPFVPFSSGL 240
  241 FVDPIASKVV IERLLDSFPA IFQDVKIPEP VVGNALEVVK LLLKETGGKA FVFVSALPTM 300
  301 GLGKLRHRED QRLYGTSDEK NLWNTQDKWY TSLADEYVTA GIGVDIFFTA TAYVDVATVG 360
  361 SVATLSGGQI YHYSNFVADR DGSRLKQDLF RSVTREQGYR VMLKTRCSNG LRVSKYLGNF 420
  421 LQRTPQDIEF GSLDADKSVT VLFSYDGKLN GALDAHFQTA VLYTTPSGER RVRVVNYCCA 480
  481 VTSKSYDTIS LAIVEPIVAV LAKIASTNIA AGSLKDTSVR LVEGVVKILS SYRKVAANRL 540
  541 TPGQLVLPKN LVLLPILILA VLKSSAIRSG SIHSDIRVSQ LREVRAAPIQ ELMLNLYPNI 600
  601 YALHQLQPTD CLPDPENTGC LPINMPLCVR ASRKFIEDGG AFLIVTGQKS YLWFHQRTSP 660
  661 LLLQDLLGVE SLEDIDSLKA LELPTLDTVL SVQVRNLLSS LRMQFPSMAL HPQIVRQGLD 720
  721 GSEGEIFSTL VEDNTREGFG YLDFLTKIHE SLHTQGYK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2nupB
Description:	No description for 2nupB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits