YRC Public Data Repository - Protein Structure Prediction

Protein:	mod5
Organism:	Schizosaccharomyces pombe
Length:	522 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mod5.

Description	E-value	Query Range	Subject Range
gi\|39579415, gi\|... - gi\|39579415\|emb\|CAE56721.1\| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi\|187040086\|em...	203.0	[0..2]	[512..35]
gi\|70878103 - gi\|70878103\|gb\|EAN91386.1\| trans-sialidase, putative [Trypanosoma cruzi] gi\|71648919 - gi\|71648919\|ref\|XP_813237.1\| trans-sialidase [Trypanosoma cruzi strain CL Brener]	202.0	[0..1]	[518..690]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	200.0	[0..3]	[515..1444]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	200.0	[0..3]	[515..795]
gi\|37930527, gi\|... - gi\|37930527\|gb\|AAP74661.1\| elicitor-like transglutaminase M81 [Phytophthora infestans], gi\|23505399\|...	184.0	[0..5]	[513..666]
gi\|31540577 - gi\|31540577\|gb\|AAP48996.1\| cellulosomal scaffoldin anchoring protein C; ScaC [Acetivibrio cellulolyt...	183.0	[0..33]	[511..464]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSALSESPAI PSFWRPETSE ISKKPRPNTT VGFQFDNRNV GTSAPSTPAI RRNNTDSFER  60
   61 GLSLPLPSSK QDTGSSVLDP DGDAYVNRYA RP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [93-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTAGSIYIPS NYHKSFSPNT FSGFNVKRSA SKSPKRSANG STSEDISIEG SPSETAKGAR  60
   61 SSFNSNFRTF DIGSERRRRI LEASQDSSRP GRYSYRTKSA SPALIDTSTL DSRLNFTMGR 120
  121 LERSIAQLSK NTMRAVSHLE NPPKDITLPK LNVKNSAWPL QPYSPPANET PASSSSSAKA 180
  181 RPVSVPDMSS PVPASSVEYE SLKAAVTYSP SQNP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [307-522]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKVAETDSES RKSSFQSSYN DADRPFQVGA QTQSTPNRIS RSDSPIVYDV DTHSEDNAST  60
   61 ASSEAISQSM RSFQPQPNTG SPFPRFTSTN TEDEQESDIP QSDANDSTVN LNQPNYANLT 120
  121 PTPQVSPKRP TYSRSSPLPS ASVPALGDGS PDPPAAPSIQ NSLSVHESEM PPHVTRDYTQ 180
  181 PAASATPVPK EKPSEKSEKP PKKKGSKLEK FCCILM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits