YRC Public Data Repository - Protein Structure Prediction

Protein:	tim21
Organism:	Schizosaccharomyces pombe
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tim21.

Description	E-value	Query Range	Subject Range
gi\|38110042, gi\|... - gi\|39951657\|ref\|XP_363545.1\| hypothetical protein MG01471.4 [Magnaporthe grisea 70-15], gb\|EAA55820....	248.0	[0..15]	[219..23]
gi\|21707747, gi\|... - gi\|74207662\|dbj\|BAE40076.1\| unnamed protein product [Mus musculus], gi\|21707747\|gb\|AAH34297.1\| RIKEN...	242.0	[0..4]	[204..49]
TIM21_GIBZE - Mitochondrial import inner membrane translocase subunit TIM21 OS=Gibberella zeae (strain PH-1 / ATCC... TIM21_GIBZE - Mitochondrial import inner membrane translocase subunit TIM21 OS=Gibberella zeae GN=TIM21 PE=3 SV=1	238.0	[0..15]	[216..23]
TIM21_RAT - Mitochondrial import inner membrane translocase subunit Tim21 OS=Rattus norvegicus GN=Timm21 PE=2 SV...	236.0	[0..3]	[204..49]
TIM21_YEAST - Mitochondrial import inner membrane translocase subunit TIM21 OS=Saccharomyces cerevisiae (strain AT... TIM21 - Nonessential subunit of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); interac...	235.0	[0..7]	[218..6]
TIM21_NEUCR - Mitochondrial import inner membrane translocase subunit tim-21 OS=Neurospora crassa GN=tim-21 PE=3 S... TIM21_NEUCR - Mitochondrial import inner membrane translocase subunit tim21 OS=Neurospora crassa (strain ATCC 2469...	227.0	[0..17]	[208..45]
CE25907 - status:Partially_confirmed UniProt:Q9TXR7 protein_id:AAK29831.1	223.0	[0..18]	[200..25]
gi\|114673558 - gi\|114673558\|ref\|XP_512174.2\| PREDICTED: similar to C18orf55 protein isoform 2 [Pan troglodytes]	222.0	[0..3]	[202..50]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRTIQRQSA TRFSSALVQR RLYSLASDSL NKQRKPQEEG RLARIFKDPS NKAWKDLTAP  60
   61 QKAYRTSANI GNFSIVIFGG GVFGLIIYAL VTSIWKGEA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HYGDEAFELL KANEECRYVF GDHMKALGEA THPLRRTHGI LTSRVWDHHG VEHLVLQFHL  60
   61 IGNERKGHVF GRLVNVQGDY KWEYLFVDVA NYGKIIIFDH TNSVRQQHKN FGLWGSLKNI 120
  121 TWGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.30103
Match:	2ciuA
Description:	No description for 2ciuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits