YRC Public Data Repository - Protein Structure Prediction

Protein:	tim21
Organism:	Schizosaccharomyces pombe
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tim21.

Description	E-value	Query Range	Subject Range
gi\|38110042, gi\|... - gi\|39951657\|ref\|XP_363545.1\| hypothetical protein MG01471.4 [Magnaporthe grisea 70-15], gb\|EAA55820....	248.0	[0..15]	[219..23]
gi\|21707747, gi\|... - gi\|74207662\|dbj\|BAE40076.1\| unnamed protein product [Mus musculus], gi\|21707747\|gb\|AAH34297.1\| RIKEN...	242.0	[0..4]	[204..49]
TIM21_GIBZE - Mitochondrial import inner membrane translocase subunit TIM21 OS=Gibberella zeae (strain PH-1 / ATCC... TIM21_GIBZE - Mitochondrial import inner membrane translocase subunit TIM21 OS=Gibberella zeae GN=TIM21 PE=3 SV=1	238.0	[0..15]	[216..23]
TIM21_RAT - Mitochondrial import inner membrane translocase subunit Tim21 OS=Rattus norvegicus GN=Timm21 PE=2 SV...	236.0	[0..3]	[204..49]
TIM21_YEAST - Mitochondrial import inner membrane translocase subunit TIM21 OS=Saccharomyces cerevisiae (strain AT... TIM21 - Nonessential subunit of the Translocase of the Inner Mitochondrial membrane (TIM23 complex); interac...	235.0	[0..7]	[218..6]
TIM21_NEUCR - Mitochondrial import inner membrane translocase subunit tim-21 OS=Neurospora crassa GN=tim-21 PE=3 S... TIM21_NEUCR - Mitochondrial import inner membrane translocase subunit tim21 OS=Neurospora crassa (strain ATCC 2469...	227.0	[0..17]	[208..45]
CE25907 - status:Partially_confirmed UniProt:Q9TXR7 protein_id:AAK29831.1	223.0	[0..18]	[200..25]
gi\|114673558 - gi\|114673558\|ref\|XP_512174.2\| PREDICTED: similar to C18orf55 protein isoform 2 [Pan troglodytes]	222.0	[0..3]	[202..50]

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Predicted Domain #1

Region A:
Residues: [1-99]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRTIQRQSA TRFSSALVQR RLYSLASDSL NKQRKPQEEG RLARIFKDPS NKAWKDLTAP  60
   61 QKAYRTSANI GNFSIVIFGG GVFGLIIYAL VTSIWKGEA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [100-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HYGDEAFELL KANEECRYVF GDHMKALGEA THPLRRTHGI LTSRVWDHHG VEHLVLQFHL  60
   61 IGNERKGHVF GRLVNVQGDY KWEYLFVDVA NYGKIIIFDH TNSVRQQHKN FGLWGSLKNI 120
  121 TWGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.30103
Match:	2ciuA
Description:	No description for 2ciuA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits