YRC Public Data Repository - Protein Structure Prediction

Protein:	mug72
Organism:	Schizosaccharomyces pombe
Length:	574 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug72.

Description	E-value	Query Range	Subject Range
gi\|6474704 - gi\|6474704\|dbj\|BAA87288.1\| Hypothetical protein [Schizosaccharomyces pombe]	305.0	[0..365]	[536..9]
gi\|238856808, gi... - gi\|238856808\|ref\|ZP_04647068.1\| glycerol-3-phosphate dehydrogenase [Enterococcus faecalis TUSoD Ef11... gi\|229305101, gi... - gi\|229549832\|ref\|ZP_04438557.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... GPDA_ENTFA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN... gi\|227073624, gi... - gi\|227518935\|ref\|ZP_03948984.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... GPDA_ENTFA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Enterococcus faecalis GN=gpsA PE=3 SV=1 gi\|229309209, gi... - gi\|229545641\|ref\|ZP_04434366.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f... gi\|227553554, gi... - gi\|227553554\|ref\|ZP_03983603.1\| NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Enterococcus f...	245.0	[0..7]	[354..1]
gi\|68195900, gi\|... - gi\|69245225\|ref\|ZP_00603303.1\| Glycerol-3-phosphate dehydrogenase (NAD(P)+) [Enterococcus faecium DO...	240.0	[0..7]	[345..1]
gi\|77955807, gi\|... - gi\|77955807\|ref\|ZP_00820145.1\| UDP-glucose 6-dehydrogenase [Marinobacter aquaeolei VT8], gi\|77865306...	240.0	[0..9]	[362..1]
gi\|134292911, gi... - gi\|67546502\|ref\|ZP_00424415.1\| UDP-glucose 6-dehydrogenase [Burkholderia vietnamiensis G4], gi\|67532...	236.0	[0..9]	[360..1]
gi\|74316979, gi\|... - gi\|74316979\|ref\|YP_314719.1\| UDP-glucose dehydrogenase [Thiobacillus denitrificans ATCC 25259], gi\|7...	235.0	[0..9]	[361..1]
gi\|72611841, gi\|... - gi\|74015038\|ref\|ZP_00685666.1\| UDP-glucose 6-dehydrogenase [Burkholderia ambifaria AMMD], gi\|7261184...	235.0	[0..9]	[360..1]
gi\|114225845, gi... - gi\|78702286\|ref\|ZP_00866726.1\| UDP-glucose 6-dehydrogenase [Alkalilimnicola ehrlichei MLHE-1], gi\|78...	235.0	[0..9]	[362..1]
GPDA_GEOKA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Geobacillus kaustophilus GN=gpsA PE=3 SV=1 GPDA_GEOKA - Glycerol-3-phosphate dehydrogenase [NAD(P)+] OS=Geobacillus kaustophilus (strain HTA426) GN=gpsA PE=...	234.0	[0..10]	[356..3]
gi\|34104351, gi\|... - gi\|34498496\|ref\|NP_902711.1\| UDP-glucose dehydrogenase [Chromobacterium violaceum ATCC 12472], gi\|34...	234.0	[0..9]	[362..1]

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Predicted Domain #1

Region A:
Residues: [1-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEDTSKLR ILSVGSNAIS AFISWRLSES KACHTTLIWR NRCESVLSEG IRIRSSVFGS  60
   61 TKWKPDVVAP TVEQLAMNSE PFDYIFVCLK ILPSVYNLDT AIKEVVTPGH TCIVLNTTGI 120
  121 VGAEKELQHA FPNNPVLSFV LPDQFAQRGP LQFEHTTFAA DSAKSVIYVG LTEEEDDVPD 180
  181 SVQDAMIETL TLTLEAGGVS CDFLSKIQKK QWETGVGHMC FYPLSIINDE PNLALMYRLK 240
  241 SFAKVIDGLM DEAFSIAQAQ GCEFEPEKLD VLKRHIVNRM LATPRPSYPY QDYIAHRPLE 300
  301 VAVLLGYPVE IAKELGVSVP RMETLLALFD AKNKRNLTVR AGTPQSSPNF NPAMRRSPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.39794
Match:	2ew2A
Description:	Crystal Structure of the Putative 2-Dehydropantoate 2-Reductase from Enterococcus faecalis
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [360-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAASRSPSRS TIGISNRIGS VDDLLNTRQF TSSPIGGSMP KGPNSIYKIP SASMVNLSSP  60
   61 LVTSPSGLNP TGRPSRFGGR VRGNPLTMNK AGSVSDLLST STNMASSDAL ETASMIGVPS 120
  121 AMPPNSFDML TLTQRRNRRN NQSSSPPAPS DRRYTMGARR PVQTRGMTDS VIPILEDPMS 180
  181 TLYDTSRYPT RNSKPATPKA SRPPSIASTV HRRMD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits