YRC Public Data Repository - Protein Structure Prediction

Protein:	set9
Organism:	Schizosaccharomyces pombe
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for set9.

Description	E-value	Query Range	Subject Range
gi\|31542284, gi\|... - gi\|31542284\|ref\|NP_659120.2\| suppressor of variegation 4-20 homolog 1 [Mus musculus], gi\|26350355\|db...	247.0	[0..5]	[359..72]
KMT5B_RAT - Histone-lysine N-methyltransferase KMT5B OS=Rattus norvegicus GN=Kmt5b PE=3 SV=1	240.0	[0..5]	[359..71]
gi\|114560105, gi... - gi\|114560107\|ref\|XP_001160638.1\| PREDICTED: ash1 (absent, small, or homeotic)-like isoform 1 [Pan tr...	229.0	[0..34]	[362..2056]
gi\|7739725, gi\|8... - gi\|8922081\|ref\|NP_060959.1\| ash1 (absent, small, or homeotic)-like [Homo sapiens], gi\|7739725\|gb\|AAF...	229.0	[0..34]	[362..2061]

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Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRQTNTHLET FSLFDDVCTC LLVDKVFYWS QIHKVRKLVD RSIERMESCS IINIITKYII  60
   61 EQTDLDQAAK NILQFRELDP LLRRLSSTSL LAFTRHLKYY LSLYLPSCKF EICSTNQYFS 120
  121 SSKPEACVIA RESINAGEDI TDLCGTIIKL SPKEERNIGI GKDFSILHSS RLDSMCLFLG 180
  181 PARFVNHDCN ANCRFNTSGK RIWLRCVRDI KPGEEITTFY SSNYFGLENC ECLCVSCERM 240
  241 GIN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.045757
Match:	2o8jA
Description:	No description for 2o8jA was found.

Predicted Domain #2

Region A:
Residues: [244-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GFKKLFHTSA TSTSCSSKSS SDVSDLSSLP QSNRYVISEE DRSFLNIWDS GGELSDASSS  60
   61 DLDEEFSLFI PRHKKRVWSR EKRLLSEMAI TNHSPLLNVD DYRKFREDLW KKRHGKRKVY 120
  121 QCSNCSQTFI NEDIQNSSAF CPKCIRHSKL FSLPWPCRHK VNRELKLEKE KEINTKRNLV 180
  181 TSSHSMSLRH KKAVDYQS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits