YRC Public Data Repository - Protein Structure Prediction

Protein:	nca2
Organism:	Schizosaccharomyces pombe
Length:	573 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nca2.

Description	E-value	Query Range	Subject Range
gi\|42554848, gi\|... - gi\|46136627\|ref\|XP_390005.1\| hypothetical protein FG09829.1 [Gibberella zeae PH-1], gi\|42554848\|gb\|E...	596.0	[0..56]	[569..107]
gi\|145011566, gi... - gi\|39975879\|ref\|XP_369330.1\| hypothetical protein MGG_06134 [Magnaporthe grisea 70-15], gb\|EAA53006....	590.0	[0..43]	[570..84]
gi\|85106724 - gi\|85106724\|ref\|XP_962241.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28923841, gi\|... - gi\|32411555\|ref\|XP_326258.1\| hypothetical protein [Neurospora crassa], gi\|28923841\|gb\|EAA33005.1\| hy...	576.0	[0..25]	[569..62]
gi\|46441894, gi\|... - gi\|68472002\|ref\|XP_720044.1\| hypothetical protein CaO19.349 [Candida albicans SC5314], gi\|68471741\|r... orf19.349, orf19... - orf19.349 CGDID:CAL0004805 Assembly 19, Contig19-10046 (224216, 222111) CDS, reverse complemented, t...	492.0	[0..82]	[570..142]
gi\|116196290, gi... - gi\|88180656\|gb\|EAQ88124.1\| hypothetical protein CHGG_04743 [Chaetomium globosum CBS 148.51], gi\|1161...	479.0	[0..66]	[569..100]
gi\|26452571 - gi\|26452571\|dbj\|BAC43370.1\| unknown protein [Arabidopsis thaliana]	476.0	[0..143]	[562..126]
NCA2_ASHGO - Nuclear control of ATPase protein 2 OS=Ashbya gossypii GN=NCA2 PE=3 SV=1 NCA2_ASHGO - Nuclear control of ATPase protein 2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /...	470.0	[0..61]	[570..101]
gi\|71006568, gi\|... - gi\|71006568\|ref\|XP_757950.1\| hypothetical protein UM01803.1 [Ustilago maydis 521], ref\|XP_399418.1\| ...	424.0	[0..132]	[573..247]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELYQKHLKD VYANFNKLAA VHGETTSNSV TFHVFQQLDS TNLTNYQLEN VITQVKELDK  60
   61 GPKDYLYWVI LGRCSAHLHV KMLDQLLEEA MIMSDNLHYW ESIDKNWYSR VLFLIQSFPT 120
  121 RLYHICRNSI KSILQFQNFS N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [142-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFAKKNLFPK VSKSDVLLFP RDAFISQASL LSLIRHEYRG NAKRLRQLRD EHACKIGCLT  60
   61 RAIMSEGVSD AASSSGDKNG ISAKADLKQV VSQWIQRLSQ LQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [244-344]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQKIDNSESL PDILSITLDN LSHPTDEYFE AKAYFRPSAI ERNWPKIFVT LLSAWLSTQI  60
   61 ITKNRTSIRL WIDYLYSTAV DFYTNWIQKP ILGIFDTIRS N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.819	a.24.18	Description not found.

Predicted Domain #4

Region A:
Residues: [345-573]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RADSQITLLQ TKSLESDMES LQRMVIDFVS DTSPAGINLD LVKQEVQQGD LTYVLQAYEH  60
   61 DLKTPIRTAV SGNLVRTLLI QLQKTKVDVE VALSGIDRLL KSQELVFATV GITPSLIFCY 120
  121 VIIRYVKANI FNNDTLSRAE RRQRFRQSLR AAERILVRSQ KMNSLDDMSY GLLVFQVNLM 180
  181 AIMSMDMGLS KDVAEDLLQD LEDIQSSSYG VQAQLRAVDR IYRLFKNSI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits