YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC17A3.08
Organism:	Schizosaccharomyces pombe
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC17A3.08.

Description	E-value	Query Range	Subject Range
TATD1_MOUSE - Putative deoxyribonuclease TATDN1 OS=Mus musculus GN=Tatdn1 PE=1 SV=1	326.0	[0..9]	[310..1]
TATDN1 - TatD DNase domain containing 1	322.0	[0..9]	[310..1]
gi\|57095336 - gi\|57095336\|ref\|XP_532325.1\| PREDICTED: similar to TatD DNase domain containing 1 [Canis familiaris]	320.0	[0..9]	[310..1]
TATD1_BOVIN - Putative deoxyribonuclease TATDN1 OS=Bos taurus GN=TATDN1 PE=2 SV=1	319.0	[0..9]	[310..1]
gi\|109087416 - gi\|109087416\|ref\|XP_001101992.1\| PREDICTED: similar to TatD DNase domain containing 1 isoform 2 [Mac...	319.0	[0..9]	[310..1]
gi\|115398231, gi... - gi\|115398231\|ref\|XP_001214707.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	317.0	[0..9]	[311..5]
gi\|83769245 - gi\|83769245\|dbj\|BAE59382.1\| unnamed protein product [Aspergillus oryzae] gi\|169773831 - gi\|169773831\|ref\|XP_001821384.1\| hypothetical protein [Aspergillus oryzae RIB40]	315.0	[0..9]	[311..5]
gi\|45550373, gi\|... - gi\|45550373\|ref\|NP_610248.2\| CG3358-PB, isoform B [Drosophila melanogaster], gi\|45445443\|gb\|AAM70836...	308.0	[0..5]	[310..3]
TATD1_XENLA - Putative deoxyribonuclease TATDN1 OS=Xenopus laevis GN=tatdn1 PE=2 SV=1	308.0	[0..9]	[310..1]

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Predicted Domain #1

Region A:
Residues: [1-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASIRQAFVK SLRFYDIGYN ATDPVFRGIY HEKLKHPDDF DSIISRAKAV GVEKMMITGD  60
   61 NVENSEEALN LATNYECFTS TVGVHPCQAQ CFLRHSEGPE DYLVKLEALA NKGKASGKVV 120
  121 AFGEFGLDYD RLHYAPADVQ KMYFEEQLKV AVRVQLPLFL HSRNAENDFF AILEKYLPEL 180
  181 PKKGVVHSFT GSIDEMRRCI EHGLYVGVNG CSLKTEENLE VVRAIPLEKM LLETDAPWCE 240
  241 VRPSHAGHQF LKTKLPFDSC KKERFKEGCM IRGRNEPCNT YIVAEIVAAL KDISLEELSE 300
  301 QIWENSINLL SK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.045757
Match:	2gzxA
Description:	No description for 2gzxA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits