YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC4B4.04
Organism:	Schizosaccharomyces pombe
Length:	576 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC4B4.04.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	352.0	[0..6]	[528..1229]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	351.0	[0..4]	[527..1057]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	343.0	[0..3]	[528..170]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	340.0	[0..3]	[522..917]
gi\|35213458, gi\|... - gi\|37522457\|ref\|NP_925834.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35213...	329.0	[0..3]	[549..518]

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Predicted Domain #1

Region A:
Residues: [1-504]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKSQFAYR SSKSIGLVNA SENYASPPKF EAISEPARNA CYSPNGKLFA YATATQVVIN  60
   61 DTESGAKLTQ LPAANTYELG FSPLGKYLST WERPGKEADG TPKQNMKVWN TETGQLVFSF 120
  121 VQRNQTGWNL QYTCDESLAA RLVTNEVHFY ETGNMSKGPI AKLRVEGISD FALSPGQNHA 180
  181 VAVFIPEKKG APASVRTYSI PNFNSPLSQK TFFKADKVQF KWNALGTSLL VLTQTEVDKS 240
  241 NKNYYGETNL YLLGITGQFD CRVDLDREGP IHDVCWNADS KEFGIVYGYM PAKTAIFDNR 300
  301 ANVVSIIPPA PRNTLIFSPN SRYILLAGFG NLQGSIDIFD AANNMKKITT VEAANCTYCE 360
  361 FSPDSQFLLT AVTSPRLRVD NSIKIWHITG APMFYEEFNE LYQAFWRPRP LNPTLLQNAL 420
  421 TSASLPSPPT PHASASKLAA KPSVKPAGAY RPPGARGQNS TFSYRREEID VMSSGSANKH 480
  481 VNSSRQRVVP GATPVIDGNK KNNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	1nr0A
Description:	Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [505-576]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTKPAVKQVA QPTAEVSDEK KIRSLCKKLR AIDDLKSRLN NNEKLEATQV KKIESEGKVL  60
   61 AELKALGWTP DA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.874	a.2.2	Ribosomal protein L29 (L29p)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits