YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1039.06
Organism:	Schizosaccharomyces pombe
Length:	415 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1039.06.

Description	E-value	Query Range	Subject Range
ALR_DESRM - Alanine racemase OS=Desulfotomaculum reducens (strain MI-1) GN=alr PE=3 SV=1	226.0	[0..38]	[414..7]
ALR_METMP - Alanine racemase OS=Methanococcus maripaludis (strain S2 / LL) GN=alr PE=3 SV=1	221.0	[0..38]	[412..8]
gi\|229127502, gi... - gi\|229127502\|ref\|ZP_04256494.1\| Alanine racemase [Bacillus cereus BDRD-Cer4], gi\|228655959\|gb\|EEL118... gi\|30020200, gi\|... - gi\|30020200\|ref\|NP_831831.1\| alanine racemase [Bacillus cereus ATCC 14579], gi\|29895750\|gb\|AAP09032.... gi\|228673896, gi... - gi\|229109560\|ref\|ZP_04239150.1\| Alanine racemase [Bacillus cereus Rock1-15], gi\|228673896\|gb\|EEL2915... gi\|229079274, gi... - gi\|229079274\|ref\|ZP_04211819.1\| Alanine racemase [Bacillus cereus Rock4-2], gi\|228704024\|gb\|EEL56465... gi\|228796804, gi... - gi\|228962874\|ref\|ZP_04124117.1\| Alanine racemase [Bacillus thuringiensis serovar pakistani str. T130... gi\|228638759, gi... - gi\|229144707\|ref\|ZP_04273107.1\| Alanine racemase [Bacillus cereus BDRD-ST24], gi\|228638759\|gb\|EEK951...	218.0	[0..39]	[413..29]
gi\|152975352, gi... - gi\|89202745\|ref\|ZP_01181457.1\| Alanine racemase region [Bacillus cereus subsp. cytotoxis NVH 391-98]...	218.0	[0..31]	[413..3]
gi\|49332838, gi\|... - gi\|49481282\|ref\|YP_036225.1\| alanine racemase [Bacillus thuringiensis serovar konkukian str. 97-27],...	216.0	[0..39]	[413..12]
gi\|74489425, gi\|... - gi\|75763091\|ref\|ZP_00742872.1\| Alanine racemase [Bacillus thuringiensis serovar israelensis ATCC 356... gi\|228858950, gi... - gi\|228900692\|ref\|ZP_04064911.1\| Alanine racemase [Bacillus thuringiensis IBL 4222], gi\|228858950\|gb\|...	216.0	[0..39]	[413..29]
gi\|52143353, gi\|... - gi\|52143353\|ref\|YP_083477.1\| alanine racemase [Bacillus cereus E33L], gi\|51976822\|gb\|AAU18372.1\| ala...	216.0	[0..39]	[413..12]
gi\|42781229, gi\|... - gi\|42781229\|ref\|NP_978476.1\| alanine racemase [Bacillus cereus ATCC 10987], gi\|42737151\|gb\|AAS41084....	216.0	[0..39]	[413..12]
gi\|47566849, gi\|... - gi\|47566849\|ref\|ZP_00237567.1\| alanine racemase [Bacillus cereus G9241], gi\|47556478\|gb\|EAL14811.1\| ...	215.0	[0..39]	[413..12]
gi\|56420835, gi\|... - gi\|56420835\|ref\|YP_148153.1\| diaminopimelate decarboxylase [Geobacillus kaustophilus HTA426], gi\|563...	215.0	[0..26]	[387..22]

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Predicted Domain #1

Region A:
Residues: [1-415]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNVDKFSS RFYLNVNKEE LKKEYVGKTI QQVPTPGFVI DEAIFEKNCN RMLDRASDIG  60
   61 VTFRAHVKTH KTIEGTLLQL GDGRTKAVVV STLMEGFSLI PLILEGKIDD LLYGLPVAKS 120
  121 RLPELYELSK IVPHLRLMID NPKQLDILRE FTSTLPDDAK PWSIFVKIDM GTHRAGVTND 180
  181 SQVVKDLIST ILSDKSLFDL FGFYCHAGHS YASRSIDAAS EFLCAEIDAA NTAAKFATSI 240
  241 DPSLKLTLSV GATPTAHSVS PKVKELLPTL SGKLEVHAGN YPMNDVQQMI TKCISQADVA 300
  301 DYVFAEVISN YPGRNGEPGE VLVNAGVIAM SRETSPEGDF GIVITPGFES FYVDRLSQEH 360
  361 GILKSKDPKA TLPDASQVLC IIPNHSCITA AAFPWYYITK GSDVITDIWV PWKGW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.522879
Match:	1xfcA
Description:	The 1.9 A crystal structure of alanine racemase from Mycobacterium tuberculosis contains a conserved entryway into the active site
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits