YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC4B3.07
Organism:	Schizosaccharomyces pombe
Length:	393 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC4B3.07.

Description	E-value	Query Range	Subject Range
ETT1_YEAST - Enhancer of translation termination 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ET... ETT1_YEAS2 - Enhancer of translation termination 1 OS=Saccharomyces cerevisiae (strain JAY291) GN=ETT1 PE=3 SV=1 YOR051C - Nuclear protein that inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model s...	431.0	[0..2]	[391..1]
gi\|6474643 - gi\|6474643\|dbj\|BAA87279.1\| Hypothetical protein [Schizosaccharomyces pombe]	345.0	[0..147]	[348..6]
ETT1_ASHGO - Enhancer of translation termination 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923... gi\|44986329, gi\|... - gi\|45201395\|ref\|NP_986965.1\| AGR299Wp [Ashbya gossypii ATCC 10895], gi\|44986329\|gb\|AAS54789.1\| AGR29...	294.0	[0..2]	[391..1]
gi\|49528523 - gi\|49528523\|emb\|CAG62184.1\| unnamed protein product [Candida glabrata] ETT1_CANGA - Enhancer of translation termination 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / N...	239.0	[0..2]	[391..1]
ETT1_CANAL - Enhancer of translation termination 1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ETT1 PE... orf19.13234, orf... - orf19.5812 CGDID:CAL0002272 Assembly 19, Contig19-10234 (61720, 62985) CDS, translated using codon t...	208.0	[0..2]	[390..1]
ETT1_KLULA - Enhancer of translation termination 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707... gi\|49644943 - gi\|49644943\|emb\|CAG98515.1\| KLLA0F16148p [Kluyveromyces lactis]	188.0	[0..2]	[390..1]
gi\|50422113, gi\|... - gi\|50422113\|ref\|XP_459619.1\| hypothetical protein DEHA0E07601g [Debaryomyces hansenii CBS767], gi\|49...	128.0	[0..16]	[390..4]
ETT1_YARLI - Enhancer of translation termination 1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ETT1 PE=3 ... gi\|49649008 - gi\|49649008\|emb\|CAG81338.1\| YALI0D22132p [Yarrowia lipolytica]	105.0	[0..2]	[274..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGRRPQGLR AAASLKKQQQ LEKQKQEASY ELSGNSSPSK ENGSENVDNG EMEDETMLVY  60
   61 TEEDNISQLW GLYEMSREKL ENDDIDASVS LVFGTIHEAD RILRNTEDIS TLPKDFHAAY 120
  121 SSALLAVSEL FEIAQKRLKE TNTEESYIDA AIERAQLGLD AP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [163-393]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNESRLFLAL ARAYLEKVRV LVWRHDNEES LANIPVTQLV NPYIEKAIQY LRPLAQDSTE  60
   61 YFDALTPDSL RPLYILSSYL FQFGDQFSEA FLLDVCSIIT ALWLKSVVDP NTPAYYKLIA 120
  121 QEAVLNNYTT FAEYYMDLLD NSESNVDDLI NKASSWLNNS VDTWNVIYTL DKSPERLLKL 180
  181 ADIKMDLAQI VQDEASQDNY LKEACNAIKE AQGSGVELSP DYVEFVEAYS A

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits