YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1289.10c
Organism:	Schizosaccharomyces pombe
Length:	743 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1289.10c.

Description	E-value	Query Range	Subject Range
gi\|3845093, gi\|1... - gi\|3845093\|gb\|AAC71809.1\| erythrocyte membrane protein 3 [Plasmodium falciparum 3D7], gi\|16804919\|re... gi\|7494164 - pir\|\|D71623 erythrocyte membrane protein PfEMP3 PFB0095c - malaria parasite (Plasmodium falciparum)	249.0	[0..7]	[724..1662]
gi\|37930527, gi\|... - gi\|37930527\|gb\|AAP74661.1\| elicitor-like transglutaminase M81 [Phytophthora infestans], gi\|23505399\|...	221.0	[0..13]	[707..812]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	213.0	[0..57]	[699..1374]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	211.0	[0..86]	[699..752]
gi\|33310026 - gi\|33310026\|gb\|AAQ03243.1\|AF414112_1 putative cell wall protein FLO11p [Candida albicans] gi\|68482880, gi\|... - gi\|68482880\|ref\|XP_714666.1\| putative cell wall adhesin [Candida albicans SC5314], gi\|46436253\|gb\|EA...	211.0	[0..4]	[718..181]
gi\|15828996 - gi\|15828996\|ref\|NP_326356.1\| lipoprotein VSAC (fragment) [Mycoplasma pulmonis UAB CTIP] gi\|14089939, gi\|... - pir\|\|E90577 lipoprotein vsaC [imported] - Mycoplasma pulmonis (strain UAB CTIP) (fragment), gi\|14089...	210.0	[0..1]	[726..36]
gi\|39592304, gi\|... - gi\|39592304\|emb\|CAE75525.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi\|187020927\|em... gi\|157762282 - gi\|157762282\|ref\|XP_001673483.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]	188.0	[0..7]	[725..1115]
TCNA_TRYCR - Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1	186.0	[0..180]	[716..599]
Muc12Ea-PA - The gene Mucin 12Ea is referred to in FlyBase by the symbol Dmel\Muc12Ea (CG32602, FBgn0052602). It ...	179.0	[0..10]	[705..2137]
gi\|9695347 - gi\|9695347\|gb\|AAF97432.1\|U23947_9 VsaC1 [Mycoplasma pulmonis]	172.0	[0..149]	[671..3]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPGLRSGV GLPSQQGQKH DLQKDQKQPH VNNADRTTQS LLNSYIYDYL IKKDYCEAAR  60
   61 AFGREAQVQT LVRSQEETNS LAKRHKRMSP VAVKHEGISN NESSDENMNV NNGNLDSFSS 120
  121 SSAPPPPPIL PIDSAGGFLI EWWNVFWDIY NARRGQGSEP AKAYMSHISN LRKKSRLNLQ 180
  181 EIQKNSLHTG NT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [193-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SHPYANASFP HDPANAMGQQ IDSSQFHQGA GGLNDRNQHL MRQAMLNNQS RETFPPTAAQ  60
   61 LQQLKQLHYR QLQSVQQQQK QHQQKKTP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [281-503]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSGSTPQMQN TTSQPTTHDT HPPKQQGPIS DFRSIPSSPK TEGAPSNAQF RPSLPATPNG  60
   61 SVPQSNPLYD TTGLNGGQYP VVQNSAQPLL HEINFASNRN PHLKQGGAVP SSTLPQQQKS 120
  121 LDKPKPAQQP STGQFSGNQM NQYGFSNSPY SQNMLYNFNG NANPSRLNPA LKNYMEELKL 180
  181 LEQQNKKRLL LVSQEKERKG YTSASPDRPL SQTITESSVA KTK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [504-661]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STTPKSTDTP TEATTSPVKV STKNSNTTEN LNGINESNMP MLQNGLPLRT SGDHPSNYSN  60
   61 LIENSSTSDT NNADNGMDVM GNWQLQQTHS SRPTPNASSP LDVRSKQKPS SANSNAPTPA 120
  121 PTVNTTNPES STNEATSVGP ALEPSQGANV HKSDSELD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [662-743]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQNQSGKSNP DTSATPSAPT ESTTVATKSS DNQLLDVGNS TDIDAALLND FDFDKFLKDT  60
   61 STGDDLWFGL FNLPDNEDST AA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits