YRC Public Data Repository - Protein Structure Prediction

Protein:	mog1
Organism:	Schizosaccharomyces pombe
Length:	190 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mog1.

Description	E-value	Query Range	Subject Range
gi\|149053011, gi... - gi\|27672836\|ref\|XP_213367.1\| PREDICTED: similar to RAN guanine nucleotide release factor [Rattus nor...	265.0	[0..4]	[189..9]
MOG1_MOUSE - Ran guanine nucleotide release factor OS=Mus musculus GN=Rangrf PE=1 SV=1	263.0	[0..4]	[189..9]
RANGRF - RAN guanine nucleotide release factor	252.0	[0..4]	[189..9]
gi\|109113207 - gi\|109113207\|ref\|XP_001112740.1\| PREDICTED: similar to RAN guanine nucleotide release factor isoform...	252.0	[0..4]	[189..9]
MOG1_BOVIN - Ran guanine nucleotide release factor OS=Bos taurus GN=RANGRF PE=2 SV=1	239.0	[0..4]	[189..9]
gi\|73955636 - gi\|73955636\|ref\|XP_849976.1\| PREDICTED: similar to RAN guanine nucleotide release factor isoform 2 [...	235.0	[0..4]	[189..9]
gi\|21593600, gi\|... - gi\|21593600\|gb\|AAM65567.1\| unknown [Arabidopsis thaliana], gi\|18655341\|gb\|AAL76126.1\| At1g69680/T6C2...	225.0	[0..4]	[189..11]

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Predicted Domain #1

Region A:
Residues: [1-190]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQLFGGALC ADFPPKFLDA SVLRQIPDNQ EVFLQDSKEN LTVIIELLEK IEKPFDGSVA  60
   61 AYHFNSIAFD NDASQRVIWR DKSLGEDDFE GMRSEKASGS SVQGCQRVLE KGKRNPESAT 120
  121 NVAIFVNVIT LIDFQTDIVI SVNAPLPNTS SVPSSVENIP PSDQSIVRAA LETIQRVTRS 180
  181 LVLVDKTVFA

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Detection Method:	PSI-BLAST
Confidence:	49.39794
Match:	1eq6A
Description:	Ran-binding protein mog1p
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
Ran GTPase binding	3.83186198399075	bayes_pls_golite062009
small GTPase binding	2.75440466170666	bayes_pls_golite062009
GTPase binding	2.73134262031387	bayes_pls_golite062009
binding	2.4093171025758	bayes_pls_golite062009
Ras GTPase binding	2.22184304825623	bayes_pls_golite062009
protein binding	1.15557714383339	bayes_pls_golite062009
enzyme binding	1.03098126048798	bayes_pls_golite062009
GTPase regulator activity	0.943196151179532	bayes_pls_golite062009
nucleoside-triphosphatase regulator activity	0.933840306327072	bayes_pls_golite062009
enzyme regulator activity	0.527133092574879	bayes_pls_golite062009
guanyl-nucleotide exchange factor activity	0.514094253633343	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: