YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC27B12.07
Organism:	Schizosaccharomyces pombe
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC27B12.07.

Description	E-value	Query Range	Subject Range
gi\|2257561 - gi\|2257561\|dbj\|BAA21453.1\| pi071 [Schizosaccharomyces pombe]	275.0	[0..1]	[237..1]
gi\|85091684 - gi\|85091684\|ref\|XP_959022.1\| hypothetical protein NCU08994 [Neurospora crassa OR74A] gi\|28920418, gi\|... - gi\|32421885\|ref\|XP_331386.1\| hypothetical protein [Neurospora crassa], gi\|28920418\|gb\|EAA29786.1\| co...	246.0	[0..77]	[283..196]
gi\|67539206, gi\|... - gi\|67539206\|ref\|XP_663377.1\| hypothetical protein AN5773.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	243.0	[0..60]	[254..115]
gi\|62663393, gi\|... - gi\|62663393\|ref\|XP_214448.3\| PREDICTED: hypothetical protein [Rattus norvegicus], gi\|109505620\|ref\|X...	222.0	[0..68]	[247..225]
gi\|88185429, gi\|... - gi\|88185429\|gb\|EAQ92897.1\| hypothetical protein CHGG_01132 [Chaetomium globosum CBS 148.51], gi\|1161...	220.0	[0..62]	[244..86]
gi\|109069682 - gi\|109069682\|ref\|XP_001092691.1\| PREDICTED: hypothetical protein [Macaca mulatta]	219.0	[0..69]	[247..155]
CCDC90A - coiled-coil domain containing 90A	218.0	[0..69]	[247..151]
gi\|39972883, gi\|... - gi\|39972883\|ref\|XP_367832.1\| hypothetical protein MG07736.4 [Magnaporthe grisea 70-15], gb\|EAA53459....	218.0	[0..60]	[247..94]
gi\|159124106 - gi\|159124106\|gb\|EDP49224.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|70991401, gi\|... - gi\|70991401\|ref\|XP_750549.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668481...	218.0	[0..60]	[256..120]
gi\|50731283 - gi\|50731283\|ref\|XP_417216.1\| PREDICTED: hypothetical protein [Gallus gallus]	216.0	[0..75]	[252..64]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLLRKAID VNRSRITLHG IKVHSINTFR LIPYSLSLTK QIRFYASEGT DAGEMEKGLS  60
   61 VVNANHENRP FRDL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGYHFNTFTF LKTLMDKGYT EKEAEGLLEV TNMFVTDMLR HSHLNYLSEA DFENCSYLFR  60
   61 TALSELRSEK INMRKDQISS LRSGLFSNQR EVESLEQLVH EQLNKLNTES KMEFENRKND 120
  121 TKNEVQQLSA RIVELHNLLA VSLGKLRAEN ERQKWDQIRK AAGVVMAFTG FLVLVIPFGL 180
  181 GVRSRKKEKQ DELDNLGSFN LDNKRDDYTD TNLSHM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.154902
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits