YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC27B12.07
Organism:	Schizosaccharomyces pombe
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC27B12.07.

Description	E-value	Query Range	Subject Range
gi\|2257561 - gi\|2257561\|dbj\|BAA21453.1\| pi071 [Schizosaccharomyces pombe]	275.0	[0..1]	[237..1]
gi\|85091684 - gi\|85091684\|ref\|XP_959022.1\| hypothetical protein NCU08994 [Neurospora crassa OR74A] gi\|28920418, gi\|... - gi\|32421885\|ref\|XP_331386.1\| hypothetical protein [Neurospora crassa], gi\|28920418\|gb\|EAA29786.1\| co...	246.0	[0..77]	[283..196]
gi\|67539206, gi\|... - gi\|67539206\|ref\|XP_663377.1\| hypothetical protein AN5773.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	243.0	[0..60]	[254..115]
gi\|62663393, gi\|... - gi\|62663393\|ref\|XP_214448.3\| PREDICTED: hypothetical protein [Rattus norvegicus], gi\|109505620\|ref\|X...	222.0	[0..68]	[247..225]
gi\|88185429, gi\|... - gi\|88185429\|gb\|EAQ92897.1\| hypothetical protein CHGG_01132 [Chaetomium globosum CBS 148.51], gi\|1161...	220.0	[0..62]	[244..86]
gi\|109069682 - gi\|109069682\|ref\|XP_001092691.1\| PREDICTED: hypothetical protein [Macaca mulatta]	219.0	[0..69]	[247..155]
CCDC90A - coiled-coil domain containing 90A	218.0	[0..69]	[247..151]
gi\|39972883, gi\|... - gi\|39972883\|ref\|XP_367832.1\| hypothetical protein MG07736.4 [Magnaporthe grisea 70-15], gb\|EAA53459....	218.0	[0..60]	[247..94]
gi\|159124106 - gi\|159124106\|gb\|EDP49224.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|70991401, gi\|... - gi\|70991401\|ref\|XP_750549.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668481...	218.0	[0..60]	[256..120]
gi\|50731283 - gi\|50731283\|ref\|XP_417216.1\| PREDICTED: hypothetical protein [Gallus gallus]	216.0	[0..75]	[252..64]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLLRKAID VNRSRITLHG IKVHSINTFR LIPYSLSLTK QIRFYASEGT DAGEMEKGLS  60
   61 VVNANHENRP FRDL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGYHFNTFTF LKTLMDKGYT EKEAEGLLEV TNMFVTDMLR HSHLNYLSEA DFENCSYLFR  60
   61 TALSELRSEK INMRKDQISS LRSGLFSNQR EVESLEQLVH EQLNKLNTES KMEFENRKND 120
  121 TKNEVQQLSA RIVELHNLLA VSLGKLRAEN ERQKWDQIRK AAGVVMAFTG FLVLVIPFGL 180
  181 GVRSRKKEKQ DELDNLGSFN LDNKRDDYTD TNLSHM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.154902
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits