YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAP8A3.14c
Organism:	Schizosaccharomyces pombe
Length:	677 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAP8A3.14c.

Description	E-value	Query Range	Subject Range
orf19.4273, orf1... - orf19.4273 CGDID:CAL0000318 Assembly 19, Contig19-10202 (105970, 103211) CDS, reverse complemented, ... gi\|68470671, gi\|... - gi\|68470671\|ref\|XP_720581.1\| hypothetical protein CaO19.4273 [Candida albicans SC5314], gi\|68470410\|...	330.0	[0..83]	[330..122]
SLS1_YEAST - Sigma-like sequence protein 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c... gi\|151941301 - gi\|151941301\|gb\|EDN59679.1\| Mitochondrial membrane protein [Saccharomyces cerevisiae YJM789] SLS1 - Mitochondrial membrane protein that coordinates expression of mitochondrially-encoded genes; may fac... gi\|207343041 - gi\|207343041\|gb\|EDZ70624.1\| YLR139Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190406168 - gi\|190406168\|gb\|EDV09435.1\| hypothetical protein SCRG_05118 [Saccharomyces cerevisiae RM11-1a]	237.0	[0..85]	[338..84]
gi\|44985700 - gi\|44985700\|gb\|AAS54324.1\| AGL167Cp [Ashbya gossypii ATCC 10895] gi\|45200930, gi\|... - gi\|45200930\|ref\|NP_986500.1\| AGL167Cp [Ashbya gossypii ATCC 10895], gi\|44985700\|gb\|AAS54324.1\| AGL16...	236.0	[0..72]	[244..136]
gi\|49528855 - gi\|49528855\|emb\|CAG62517.1\| unnamed protein product [Candida glabrata] gi\|49528855, gi\|... - gi\|50294259\|ref\|XP_449541.1\| hypothetical protein CAGL0M04455g [Candida glabrata CBS138], gi\|4952885...	130.0	[0..79]	[338..133]
gi\|49642942, gi\|... - gi\|50307657\|ref\|XP_453808.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642942\|emb\|CAH0090... gi\|49642942\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	127.0	[0..84]	[338..125]
gi\|50423007, gi\|... - gi\|50423007\|ref\|XP_460082.1\| hypothetical protein DEHA0E18777g [Debaryomyces hansenii CBS767], gi\|49...	109.0	[0..81]	[329..104]
gi\|50555201, gi\|... - gi\|50555201\|ref\|XP_505009.1\| YALI0F04884p [Yarrowia lipolytica], gi\|49650879\|emb\|CAG77816.1\| unnamed... gi\|49650879 - gi\|49650879\|emb\|CAG77816.1\| YALI0F04884p [Yarrowia lipolytica]	55.0	[0..76]	[349..535]

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Predicted Domain #1

Region A:
Residues: [1-322]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKGSLLNRN INALNCRCLA QKLTSWGLLN IRSIHADSNR GVVNSSNLII IPPYKPKSKS  60
   61 VLRSPYLTSH YVDALAFKLV EDPTVHNTLE DVFQDIESYK PKSVNTSAKS FRQLVNTLEV 120
  121 AFRKEQLRKF AKVFHIKSSS LRKKEIIERI LLDHWKLRIH GDAMDDMLAI KDVTLCPLEM 180
  181 FFLLLNNASA LRDISQKHAA HVVINVTNNN IKIEAKKRDV AIVEELISGI FKHLKSKTID 240
  241 VTEYYANIIN KNAVLLSERC KAYIELSGKA QIKITTAFGN CSFDEIERKL LSFVMLFENT 300
  301 DKCLIDSECL TSKKSFTLND FT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [323-497]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDFRLPWYLK DDSWKRWCRV KEYSWNTSVL SDEALTRNSL TLPVPIKPSI NKDISSIEVK  60
   61 DLSQKNTTQS KKLNSYIRDS FHSVNDFWFS SHATNTEQCF TKRLTATFGY SLFSSSFLSH 120
  121 TKNPDVASFY VKERSKAHHF LFNTFVDQIP SYLKNHSILD ETTRKSFYRI ILSSN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [498-677]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLSTSLTYPL IEIILPIKNG FLMGKETFQI AFKKSRGYQI LLPESELDLK INTTTFKTIA  60
   61 NNKSVDAFLD DCVSFFSRPE MTQDSQLNAS SGFLTNFSLK DSTDRFYKVL SYEKVSERFV 120
  121 KIDDSYITYS DIFSPLSHSH KDWFRIHTEE NSSKNFYEII SEIVGGFPYY SQANERSLIS 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits