YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC17G9.06c
Organism:	Schizosaccharomyces pombe
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC17G9.06c.

Description	E-value	Query Range	Subject Range
gi\|77460163, gi\|... - gi\|77460163\|ref\|YP_349670.1\| hypothetical protein Pfl01_3942 [Pseudomonas fluorescens Pf0-1], gi\|773...	251.0	[0..19]	[330..24]
gi\|18105477 - gi\|18105477\|gb\|AAL59665.1\| putative acetylase [Pseudomonas fluorescens]	244.0	[0..21]	[331..26]
gi\|67540128, gi\|... - gi\|67540128\|ref\|XP_663838.1\| hypothetical protein AN6234.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	235.0	[0..6]	[328..91]
gi\|159128197 - gi\|159128197\|gb\|EDP53312.1\| siderophore biosynthesis acetylase AceI, putative [Aspergillus fumigatus... gi\|70986332, gi\|... - gi\|70986332\|ref\|XP_748660.1\| siderophore biosynthesis acetylase AceI [Aspergillus fumigatus Af293], ...	229.0	[0..6]	[328..110]
gi\|27764282, gi\|... - gi\|27764282\|emb\|CAD60562.1\| unnamed protein product [Podospora anserina], gi\|170940014\|emb\|CAP65240.... gi\|171680773 - gi\|171680773\|ref\|XP_001905331.1\| unnamed protein product [Podospora anserina]	229.0	[0..6]	[328..97]
gi\|169784608 - gi\|169784608\|ref\|XP_001826765.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83775512 - gi\|83775512\|dbj\|BAE65632.1\| unnamed protein product [Aspergillus oryzae]	228.0	[0..6]	[328..99]
gi\|32410873, gi\|... - gi\|32410873\|ref\|XP_325917.1\| hypothetical protein [Neurospora crassa], gi\|28921280\|gb\|EAA30589.1\| co... gi\|85094114 - gi\|85094114\|ref\|XP_959825.1\| hypothetical protein NCU06062 [Neurospora crassa OR74A]	226.0	[0..6]	[328..98]
gi\|67157319, gi\|... - gi\|67157319\|ref\|ZP_00418621.1\| hypothetical protein AvinDRAFT_2791 [Azotobacter vinelandii AvOP], gi...	222.0	[0..30]	[329..47]
gi\|95109949 - gi\|95109949\|emb\|CAK14654.1\| siderophore biosynthesis protein [Pseudomonas entomophila L48] gi\|104780962, gi... - gi\|95109949\|emb\|CAK14654.1\| siderophore biosynthesis protein [Pseudomonas entomophila L48], gi\|10478...	219.0	[0..12]	[331..11]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTVWSKTE PFKLSAVQES LITLEHDNKR LLLTYREESK TWDIDLNGFQ DMDVNEILQL  60
   61 AFLSIFYVFP TLRTEVVLQW ANIESQKGTL SLPVEYNELE GNVSIDRMSF WQIPSPWMYT 120
  121 RCSDWPLSYL PNQVIRRPKC PKPGSTLYER FIPSLN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [157-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETLSFVSLDI EQHLQYFHEW QNKPRVEYFW NESGSWDQHH EYLTTLQNDP HSFGVIGCFN  60
   61 DVPFAYFEVY WVPEDRIAPF AQPWHTHDRG FHALVGNDKF RGPHRVPVWL SSITHMLFLD 120
  121 DPRTQRVLLE PRIDNSKFIN YLIEENYSKR LEFNFPHKRA AFMEITRNMF FSCLGPRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	2qmlA
Description:	No description for 2qmlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits