YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC17G9.06c
Organism:	Schizosaccharomyces pombe
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC17G9.06c.

Description	E-value	Query Range	Subject Range
gi\|77460163, gi\|... - gi\|77460163\|ref\|YP_349670.1\| hypothetical protein Pfl01_3942 [Pseudomonas fluorescens Pf0-1], gi\|773...	251.0	[0..19]	[330..24]
gi\|18105477 - gi\|18105477\|gb\|AAL59665.1\| putative acetylase [Pseudomonas fluorescens]	244.0	[0..21]	[331..26]
gi\|67540128, gi\|... - gi\|67540128\|ref\|XP_663838.1\| hypothetical protein AN6234.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	235.0	[0..6]	[328..91]
gi\|159128197 - gi\|159128197\|gb\|EDP53312.1\| siderophore biosynthesis acetylase AceI, putative [Aspergillus fumigatus... gi\|70986332, gi\|... - gi\|70986332\|ref\|XP_748660.1\| siderophore biosynthesis acetylase AceI [Aspergillus fumigatus Af293], ...	229.0	[0..6]	[328..110]
gi\|27764282, gi\|... - gi\|27764282\|emb\|CAD60562.1\| unnamed protein product [Podospora anserina], gi\|170940014\|emb\|CAP65240.... gi\|171680773 - gi\|171680773\|ref\|XP_001905331.1\| unnamed protein product [Podospora anserina]	229.0	[0..6]	[328..97]
gi\|169784608 - gi\|169784608\|ref\|XP_001826765.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83775512 - gi\|83775512\|dbj\|BAE65632.1\| unnamed protein product [Aspergillus oryzae]	228.0	[0..6]	[328..99]
gi\|32410873, gi\|... - gi\|32410873\|ref\|XP_325917.1\| hypothetical protein [Neurospora crassa], gi\|28921280\|gb\|EAA30589.1\| co... gi\|85094114 - gi\|85094114\|ref\|XP_959825.1\| hypothetical protein NCU06062 [Neurospora crassa OR74A]	226.0	[0..6]	[328..98]
gi\|67157319, gi\|... - gi\|67157319\|ref\|ZP_00418621.1\| hypothetical protein AvinDRAFT_2791 [Azotobacter vinelandii AvOP], gi...	222.0	[0..30]	[329..47]
gi\|95109949 - gi\|95109949\|emb\|CAK14654.1\| siderophore biosynthesis protein [Pseudomonas entomophila L48] gi\|104780962, gi... - gi\|95109949\|emb\|CAK14654.1\| siderophore biosynthesis protein [Pseudomonas entomophila L48], gi\|10478...	219.0	[0..12]	[331..11]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTVWSKTE PFKLSAVQES LITLEHDNKR LLLTYREESK TWDIDLNGFQ DMDVNEILQL  60
   61 AFLSIFYVFP TLRTEVVLQW ANIESQKGTL SLPVEYNELE GNVSIDRMSF WQIPSPWMYT 120
  121 RCSDWPLSYL PNQVIRRPKC PKPGSTLYER FIPSLN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [157-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETLSFVSLDI EQHLQYFHEW QNKPRVEYFW NESGSWDQHH EYLTTLQNDP HSFGVIGCFN  60
   61 DVPFAYFEVY WVPEDRIAPF AQPWHTHDRG FHALVGNDKF RGPHRVPVWL SSITHMLFLD 120
  121 DPRTQRVLLE PRIDNSKFIN YLIEENYSKR LEFNFPHKRA AFMEITRNMF FSCLGPRI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	2qmlA
Description:	No description for 2qmlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits