YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC306.06c
Organism:	Schizosaccharomyces pombe
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC306.06c.

Description	E-value	Query Range	Subject Range
gi\|145019318, gi... - gi\|39945920\|ref\|XP_362497.1\| hypothetical protein MGG_08080 [Magnaporthe grisea 70-15], gb\|EAA57111....	297.0	[0..10]	[304..10]
gi\|28923115, gi\|... - gi\|32412430\|ref\|XP_326695.1\| predicted protein [Neurospora crassa], gi\|28923115\|gb\|EAA32332.1\| predi... gi\|85103656 - gi\|85103656\|ref\|XP_961568.1\| hypothetical protein NCU01202 [Neurospora crassa OR74A]	286.0	[0..9]	[304..9]
gi\|46126127, gi\|... - gi\|46126127\|ref\|XP_387617.1\| hypothetical protein FG07441.1 [Gibberella zeae PH-1], gi\|42554615\|gb\|E...	267.0	[0..18]	[304..19]
BIG1_CANAL - Protein BIG1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=BIG1 PE=1 SV=1 BIG1_CANAL - Protein BIG1 OS=Candida albicans GN=BIG1 PE=1 SV=1	262.0	[0..53]	[287..54]
gi\|40743587, gi\|... - gi\|67539028\|ref\|XP_663288.1\| hypothetical protein AN5684.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	259.0	[0..18]	[304..19]
gi\|169765506 - gi\|169765506\|ref\|XP_001817224.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238482059, gi... - gi\|238482059\|ref\|XP_002372268.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22... gi\|83765079 - gi\|83765079\|dbj\|BAE55222.1\| unnamed protein product [Aspergillus oryzae]	220.0	[0..7]	[304..8]
gi\|115395064, gi... - gi\|115395064\|ref\|XP_001213481.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	210.0	[0..7]	[304..8]
BIG1_ASHGO - Protein BIG1 OS=Ashbya gossypii GN=BIG1 PE=3 SV=1 BIG1_ASHGO - Protein BIG1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=BIG1 P...	205.0	[0..21]	[241..25]
gi\|46309121 - gi\|46309121\|emb\|CAG25778.1\| big1-like [Pichia jadinii]	199.0	[0..31]	[231..2]
BIG1_YEAST - Protein BIG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BIG1 PE=1 SV=1 BIG1 - Integral membrane protein of the endoplasmic reticulum, required for normal content of cell wall bet... gi\|190405880 - gi\|190405880\|gb\|EDV09147.1\| hypothetical protein SCRG_04814 [Saccharomyces cerevisiae RM11-1a]	176.0	[0..23]	[283..29]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSWSILFIV CFSLVSAFKD TSPIFLFSTN SKLPKSSDDS SISTCPMMFF DAAIEALSTC  60
   61 NTATLIIHQP GLEVNDFQLG AFKHLKRVSL QSPYSLLLPY SKESLDSQEL VHSAKQNCDV 120
  121 EVVYLGGSFN AFPPLQNDRI TVVYMNELSN ESYHRSAQLM ELDEMFYNLQ STLEQDAQWN 180
  181 VIIASSPLN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [190-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSDFEGFKVD ANEEEANAEF VIQTLGGLNS GKSALQHGQL ASLPDQNEGS QTTLAMHQTR  60
   61 KHPVTDNGAT GLFTEYQFFT PGLYMGYLAL AVLVPTLFIS CRLLSSIQIS YHAFDSPRRK 120
  121 QL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits