YRC Public Data Repository - Protein Structure Prediction

Protein:	epl1
Organism:	Schizosaccharomyces pombe
Length:	557 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for epl1.

Description	E-value	Query Range	Subject Range
EPL1_GIBZE - Enhancer of polycomb-like protein 1 OS=Gibberella zeae GN=EPL1 PE=3 SV=1 EPL1_GIBZE - Enhancer of polycomb-like protein 1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NR...	410.0	[0..7]	[548..2]
EPL1_NEUCR - Enhancer of polycomb-like protein 1 OS=Neurospora crassa GN=epl-1 PE=3 SV=1 EPL1_NEUCR - Enhancer of polycomb-like protein 1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.7...	397.0	[0..7]	[548..2]
gi\|38109395, gi\|... - gi\|39978095\|ref\|XP_370435.1\| hypothetical protein MGG_06932 [Magnaporthe grisea 70-15], gb\|EAA55275....	395.0	[0..7]	[548..2]
EPL1_EMENI - Enhancer of polycomb-like protein 1 OS=Emericella nidulans GN=epl1 PE=3 SV=1 EPL1_EMENI - Enhancer of polycomb-like protein 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46...	377.0	[0..10]	[549..9]
gi\|114629985 - gi\|114629985\|ref\|XP_507733.2\| PREDICTED: enhancer of polycomb 1 isoform 4 [Pan troglodytes]	362.0	[0..10]	[447..5]
EPC1 - enhancer of polycomb homolog 1 (Drosophila)	359.0	[0..10]	[447..5]
gi\|73948773 - gi\|73948773\|ref\|XP_535156.2\| PREDICTED: similar to enhancer of polycomb 1 isoform 1 [Canis familiari...	358.0	[0..10]	[447..5]

Back

Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVSKNARA YRQRKVGIKT VMPIYFERDI PDFDEEASLQ RTVPLVESGV EKEEEEEKHL  60
   61 QQVINEAHEA IVRGSEKKLI IPTREAKNIG IIDKYYKKNF ILPKTLIRFS LTVEECTNPE 120
  121 YCMDEHDTEY FLKLKQAQPS LSKFSELDFE IVMQTFEEEI NQNQPFLSMD TSQILPLSEL 180
  181 ITSFELKDVL YLKPLASQVY PYWRERRISK GGLPIMAKA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [220-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QVGDDKDDDD PYVCFRRREI RQARKTRRSD AQSYDRLRRL RQSMETSLQL LEQVYKREQK  60
   61 KLQALEDDYA IFQKRCLVKK LKRTLNIKDS DELLINPKRR PIEVKPAAPV PTPAPPVKTS 120
  121 PHPASYRPQP TRNVEVRPLL MLDDVQSAQI TQFQIRLQQR LTKKEQLDRN WVDLLETPST 180
  181 VIHTNYPDSF YRNII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.0
Match:	1eqfA
Description:	TAFII250 double bromodomain module
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [415-557]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYYSGKETKQ SHNQLSIPSS TPSTPLSDNG PTYSTPHSSL SNFNTCDSLS FSSNNSLYGY  60
   61 STLLHPRNPI CVRQRIGRGG RLMLDRTRAL PVHRLSKPKS RVEDRWLFDI PFDADDTIIL 120
  121 DDESDASIMF RASLLNDDMG TQS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits