YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC8D2.13
Organism:	Schizosaccharomyces pombe
Length:	451 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC8D2.13.

Description	E-value	Query Range	Subject Range
SHQ1 - SHQ1 homolog (S. cerevisiae)	602.0	[0..1]	[421..1]
gi\|114587873 - gi\|114587873\|ref\|XP_001141951.1\| PREDICTED: SHQ1 homolog isoform 2 [Pan troglodytes]	599.0	[0..1]	[421..1]
gi\|2257540, gi\|1... - gi\|2257540\|dbj\|BAA21433.1\| HYPOTHETICAL 59.2KD PROTEIN IN PFK26-SGA1 INTERGENIC REGION [Schizosaccha...	593.0	[0..47]	[451..1]
gi\|109472406 - gi\|109472406\|ref\|XP_232222.4\| PREDICTED: similar to SHQ1 homolog [Rattus norvegicus]	591.0	[0..1]	[446..1]
gi\|109036672 - gi\|109036672\|ref\|XP_001082636.1\| PREDICTED: similar to SHQ1 homolog isoform 2 [Macaca mulatta]	583.0	[0..1]	[421..1]
orf19.5206, orf1... - orf19.5206 CGDID:CAL0003486 Assembly 19, Contig19-10221 (6005, 4476) CDS, reverse complemented, tran... gi\|68490515, gi\|... - gi\|68490546\|ref\|XP_710899.1\| hypothetical protein CaO19.12673 [Candida albicans SC5314], gi\|68490515...	569.0	[0..1]	[450..1]
gi\|187021732, gi... - gi\|39581414\|emb\|CAE74696.1\| Hypothetical protein CBG22510 [Caenorhabditis briggsae], gi\|187021732\|em... gi\|157759309 - gi\|157759309\|ref\|XP_001671998.1\| Hypothetical protein CBG22510 [Caenorhabditis briggsae AF16]	551.0	[0..3]	[447..206]
SHQ1_YEAST - Protein SHQ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SHQ1 PE=1 SV=1 gi\|207344374 - gi\|207344374\|gb\|EDZ71540.1\| YIL104Cp-like protein [Saccharomyces cerevisiae AWRI1631] SHQ1 - Chaperone protein required for the assembly of box H/ACA snoRNPs and thus for pre-rRNA processing, f... gi\|190406315 - gi\|190406315\|gb\|EDV09582.1\| hypothetical protein SCRG_05276 [Saccharomyces cerevisiae RM11-1a]	539.0	[0..1]	[447..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MITPKFELRQ DEEFVYLDVH TPYIKAKNVE IDAFNNEVNF CIAPYFLKLE LPGNVLDDDR  60
   61 ANASYDISSG FVHIKFPKET PGEVFPDLDL LTTLLVNQNK EPVKKPLIEE VEDTPSPSTS 120
  121 QNASKDEEKE VKIDWQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.71
Match:	1ejfA
Description:	Co-chaperone p23
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.83120931289484	bayes_pls_golite062009
protein binding	0.924442061409513	bayes_pls_golite062009
catalytic activity	0.275980651078653	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [137-252]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NIHFDDPDFD WGLLQRLDDE KMQYTSTSQY GFNNQYSGLL KYNALVGNEI NQIPEPERTP  60
   61 PSTRSEIRVQ LEDEKFDAEH YMADFYDREM IDEILHYIPD YIGEFLLVQQ GKSDRL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [253-451]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEFTSEEKEA LAKLPKRSYL IDNPKNVYLC LVPLIFAYAY DNRTTLGDPT IESCWNIGTL  60
   61 SSTISCLDTN FLAIKDIFIA CIRRSLAYPL YRNWDLALTC WKDTHAILSL GKRWILRVLL 120
  121 RIRNLFEHHD VYYIYNAIVL NDYAYWIQTA NDNVLAALAY QVSECTITKE ETNWPLEEIE 180
  181 ANVQETIIAS DEESESIEK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	125.275724
Match:	PF04925.6
Description:	No description for PF04925.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: