YRC Public Data Repository - Protein Structure Prediction

Protein:	dcp1
Organism:	Schizosaccharomyces pombe
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for dcp1.

Description	E-value	Query Range	Subject Range
gi\|182890038, gi... - gi\|47271431\|ref\|NP_878313.2\| decapping enzyme [Danio rerio], gi\|28277705\|gb\|AAH44477.1\| Decapping en...	185.0	[0..1]	[125..1]
gi\|73985278 - gi\|73985278\|ref\|XP_849483.1\| PREDICTED: similar to decapping enzyme isoform 1 [Canis familiaris]	185.0	[0..1]	[126..1]
gi\|114587382 - gi\|114587382\|ref\|XP_516527.2\| PREDICTED: hypothetical protein isoform 7 [Pan troglodytes]	184.0	[0..1]	[126..1]
gi\|123993169, gi... - gi\|124000159\|gb\|ABM87588.1\| DCP1 decapping enzyme homolog A (S. cerevisiae) [synthetic construct], g... DCP1A - DCP1 decapping enzyme homolog A (S. cerevisiae)	184.0	[0..1]	[126..1]
gi\|109039085 - gi\|109039085\|ref\|XP_001083504.1\| PREDICTED: DCP1 decapping enzyme homolog A isoform 3 [Macaca mulatt...	184.0	[0..1]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDENILRNA VNLQVLKFHY PEIESIIDIA SHVAVYQFDV GSQKWLKTSI EGTFFLVKDQ  60
   61 RARVGYVILN RNSPENLYLF INHPSNVHLV DRYLIHRTEN QHVVGLWMFD PNDMSRIFNI 120
  121 VKESLLR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	5.57
Match:	1q67A
Description:	Crystal structure of Dcp1p
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits