YRC Public Data Repository - Protein Structure Prediction

Protein:	git1
Organism:	Schizosaccharomyces pombe
Length:	1098 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for git1.

Description	E-value	Query Range	Subject Range
gi\|85110917 - gi\|85110917\|ref\|XP_963693.1\| hypothetical protein NCU02833 [Neurospora crassa OR74A] gi\|28925400, gi\|... - gi\|32419086\|ref\|XP_330021.1\| hypothetical protein ( hypothetical protein B14D6.520 [imported] - Neur...	737.0	[0..136]	[1097..191]
gi\|49134266, gi\|... - gi\|67904184\|ref\|XP_682348.1\| hypothetical protein AN9079.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	713.0	[0..136]	[1097..182]
gi\|42554088, gi\|... - gi\|46125483\|ref\|XP_387295.1\| hypothetical protein FG07119.1 [Gibberella zeae PH-1], gi\|42554088\|gb\|E...	689.0	[0..131]	[1097..174]
gi\|169782094 - gi\|169782094\|ref\|XP_001825510.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83774252 - gi\|83774252\|dbj\|BAE64377.1\| unnamed protein product [Aspergillus oryzae]	648.0	[0..133]	[1097..179]
gi\|115385370, gi... - gi\|115385370\|ref\|XP_001209232.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	637.0	[0..131]	[1097..177]
gi\|66844321, gi\|... - gi\|70982338\|ref\|XP_746697.1\| C2 domain protein [Aspergillus fumigatus Af293], gi\|66844321\|gb\|EAL8465...	627.0	[0..131]	[1097..178]
gi\|88185765, gi\|... - gi\|88185765\|gb\|EAQ93233.1\| hypothetical protein CHGG_01468 [Chaetomium globosum CBS 148.51], gi\|1161...	618.0	[0..5]	[1097..40]
gi\|90299359, gi\|... - gi\|90299359\|gb\|EAS28990.1\| hypothetical protein CIMG_07736 [Coccidioides immitis RS], gi\|119177641\|r...	595.0	[0..133]	[1097..97]
gi\|111057320 - gi\|111057320\|gb\|EAT78440.1\| hypothetical protein SNOG_14203 [Phaeosphaeria nodorum SN15]	592.0	[0..120]	[1097..164]
gi\|71013504, gi\|... - gi\|71013504\|ref\|XP_758603.1\| hypothetical protein UM02456.1 [Ustilago maydis 521], ref\|XP_400071.1\| ...	577.0	[0..148]	[1096..190]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFTSVEPPD FFDWTARAIF LLSTLRSRRN AKQIERENAL LDQIKELLSI AIIQCHERNI  60
   61 PSIDLPPSFF NYVCEQLPRH PFAKIASSYI DTHTLFFQIS ISSFLCRFSN CSEDEIRLFK 120
  121 QHQSLDSFLL SLFDLLCSHH FSVEFTSISL IIKSSQWLFY TLSDYAHESL TGVEADITTK 180
  181 FLSTLADTWP EFEEQCTLSK HLFLLGDFSL ISYVKVLCGV FNIPNYNAFI LSVED

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [236-413]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLPENISFAA VADFQLSKYR AINDNSVLRS DDFSSKAVFD KYVERECYYS ENAISKIFQN  60
   61 YPDLAVLFEE LQYAEGNNDL LSAILNTNKY TLRPDDCAPY FYRLMDLCLR YCYSQSNEIG 120
  121 TNVLWSMTTS FINIWRIHPG TCCCVVLSIY WPYLEDKLLK FSDLGDIFEY FFSLIHDC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.427	a.118.8	TPR-like
View	Download	0.397	a.4.6	C-terminal effector domain of the bipartite response regulators
View	Download	0.546	a.79.1	Antitermination factor NusB
View	Download	0.444	d.54.1	Enolase N-terminal domain-like
View	Download	0.405	a.118.8	TPR-like

Predicted Domain #3

Region A:
Residues: [414-544]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DYAIWSVHDE HQFSELLAFY HRRALNDLVE ELGSCPRSSD SCRAILDILN NYIFSCPLFL  60
   61 VTPEELEEQY TDFFKKLKEK YGEFFQNLLK KELTGKPESD LEGLRLVGVQ LQATYENLKS 120
  121 NFSARIFNQL S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [545-707]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VHSFFAEATC HLFLEKLPTI TKTYVYSNCK EIPDHILEMI NALYQQTRAL VACTGYLSSD  60
   61 YPKIYEAFSG TFVYRNLSLI IDKGLANVLQ TVLRESFIPK RSRFYSDSTK MILAPLQDCY 120
  121 DFLQKIDWPS SKDANRFYLH LGKLSENYIH YYVDSMYALF IYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	2yrbA
Description:	No description for 2yrbA was found.

Predicted Domain #5

Region A:
Residues: [708-788]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDIPLKAEPL VPDLPVKQLK EKASHFKRHS GDPNFLKLYR ESFTLINTVS LVSGWLKMLH  60
   61 QRIDYKILTE KVMHFKDMEV P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.0
Match:	1djgA
Description:	Phosphoinositide-specific phospholipase C, isozyme D1 (PLC-D!); PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain; Phospholipase C isozyme D1 (PLC-D1)
Matching Structure (courtesy of the PDB):

Predicted Domain #6

Region A:
Residues: [789-996]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SATVIISIKM AHLLVTPKAP YSFSVLLQDP ESEFCVHTRD VYDELVPNWK ETYQMEITNV  60
   61 KRFKLIIYQR NIHTGLETVY GHATLEVDPD KLKQGHGKDV WLDITNKGQI LIGLRVLLKR 120
  121 ETPNYYCFAQ MEYLTVTEVK MLNVLMISLS KFIRNSLRNS GLMDFVRYLD GDENDNAEAE 180
  181 TKEKMDELQA RCEKEQQSLL AELDDFFY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1dqvA
Description:	Synaptogamin I
Matching Structure (courtesy of the PDB):

Predicted Domain #7

Region A:
Residues: [997-1098]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WIYVNLLPKP LFYLLSRLWF GLLETFRDIL VPPVTDSTLR RIPLNKRELK MVYSWLQLFY  60
   61 DFFRNFQDIA PFDFLNTDEY KSVMAIKDYY FVKSKDVKRV SS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.861	0.285	cAMP-mediated signaling	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.858	0.150	cAMP-mediated signaling	a.118.1	ARM repeat
View	Download	0.826	0.011	cAMP-mediated signaling	a.71.2	Helical domain of Sec23/24
View	Download	0.809	0.011	cAMP-mediated signaling	a.63.1	Apolipophorin-III
View	Download	0.761	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits