YRC Public Data Repository - Protein Structure Prediction

Protein:	cog2
Organism:	Schizosaccharomyces pombe
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cog2.

Description	E-value	Query Range	Subject Range
cogc-2 - status:Confirmed UniProt:Q21444 protein_id:AAB03139.2	180.0	[0..11]	[163..20]
gi\|114573120 - gi\|114573120\|ref\|XP_001147997.1\| PREDICTED: component of oligomeric golgi complex 2 isoform 1 [Pan t...	177.0	[0..15]	[167..15]
gi\|123997539, gi... - gi\|157929002\|gb\|ABW03786.1\| component of oligomeric golgi complex 2 [synthetic construct], gi\|123997... COG2 - component of oligomeric golgi complex 2	176.0	[0..15]	[167..15]
gi\|187039104, gi... - gi\|39585208\|emb\|CAE57451.1\| Hypothetical protein CBG00414 [Caenorhabditis briggsae], gi\|187039104\|em... gi\|157754265 - gi\|157754265\|ref\|XP_001669476.1\| Hypothetical protein CBG00414 [Caenorhabditis briggsae AF16]	173.0	[0..11]	[164..19]
gi\|109508194, gi... - gi\|109509044\|ref\|XP_001053407.1\| PREDICTED: similar to component of oligomeric golgi complex 2 isofo...	173.0	[0..15]	[167..15]
gi\|116003899, gi... - gi\|116003899\|ref\|NP_001070307.1\| hypothetical protein LOC512213 [Bos taurus], gi\|115304786\|gb\|AAI234...	173.0	[0..15]	[167..15]
gi\|74178852 - gi\|74178852\|dbj\|BAE34057.1\| unnamed protein product [Mus musculus]	173.0	[0..15]	[167..15]

Back

Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEKDADSGS DLVDAFLSDA YLNTEELRKD GPFSPDEFLV SKRFLGLDGL VNELSRLFEQ  60
   61 VNNELMLLVK DNYQDFVHLG SRMKSGNTKV STLISSIHRS EEQLKNSKQS LIGHSTEIQN 120
  121 NLKHKQDVEN EKLIASNLLL LDQILKFLKS NDSSHPLWLE SLNNAQRLCD TYKDHPWVQS 180
  181 ISPTLINYIK H

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.22
Match:	1m1jC
Description:	Fibrinogen C-terminal domains; Fibrinogen gamma chain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits