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View Structure Prediction Details

Protein: tfb2
Organism: Schizosaccharomyces pombe
Length: 447 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tfb2.

Description E-value Query
Range
Subject
Range
gi|94733612 - gi|94733612|emb|CAK04588.1| novel protein (zgc:77721) [Danio rerio]
647.0 [0..8] [446..11]
gi|220942562 - gi|220942562|gb|ACL83824.1| Tfb2-PA [synthetic construct]
mrn-PA - The gene marionette is referred to in FlyBase by the symbol Dmel\mrn (CG7764, FBgn0261109). It is a ...
635.0 [0..10] [446..38]
gi|46097692, gi|... - gi|71024427|ref|XP_762443.1| hypothetical protein UM06296.1 [Ustilago maydis 521], ref|XP_403911.1| ...
628.0 [0..8] [445..41]
gi|31201525, gi|... - gi|31201525|ref|XP_309710.1| AGAP010984-PA [Anopheles gambiae str. PEST], gi|21293295|gb|EAA05440.1|...
AGAP010984-PA - transcription initiation factor TFIIH subunit 4|protein_coding|3L:14482557:14484211:-1|gene:AGAP0109...
622.0 [0..9] [446..37]
gi|47059175, gi|... - gi|47059175|ref|NP_997666.1| general transcription factor II H, polypeptide 4 [Rattus norvegicus], g...
622.0 [0..8] [445..19]
gi|73972150 - gi|73972150|ref|XP_848919.1| PREDICTED: similar to general transcription factor II H, polypeptide 4 ...
621.0 [0..8] [445..19]
TF2H4_MOUSE - General transcription factor IIH subunit 4 OS=Mus musculus GN=Gtf2h4 PE=1 SV=1
620.0 [0..8] [445..19]
gi|114050799, gi... - gi|55700798|dbj|BAD69753.1| general transcription factor IIH, polypeptide 4, 52kDa [Macaca mulatta],...
gi|60655839, gi|... - gi|60655841|gb|AAX32484.1| general transcription factor IIH polypeptide 4 [synthetic construct], gi|...
GTF2H4 - general transcription factor IIH, polypeptide 4, 52kDa
TF2H4_PANTR - General transcription factor IIH subunit 4 OS=Pan troglodytes GN=GTF2H4 PE=3 SV=1
620.0 [0..8] [445..18]
gi|178056954, gi... - gi|47496805|dbj|BAD08426.2| general transcription factor IIH, polypeptide 4 [Sus scrofa], gi|4152916...
618.0 [0..8] [445..19]

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Predicted Domain #1
Region A:
Residues: [1-114]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAEFKSSIN DFLEQLPNHA RLYQKPAACL AVFRLLPILA RQYVMSMLFN PMPVALSDFD  60
   61 LWIKLSSKVY QSESFNKLVR MHIFQFDGQY ITLNSEFRKQ FITALTGGGN HNSF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [115-286]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVPCTDEDKH LVTVDFLDAY AKETWETILH FMVGTPEAKF PGEGVLSLLK RGGLMSGPKN  60
   61 QLRITRAGFQ FLLQDINAQI WTLLLDYLKL SEDTHMDPVQ VLHFLFMLGS LDLGRAYSVD 120
  121 FLTDTQQIML EDLREYGLVY QRKITSKRFY PTRLATGLTT DYRSLHGKQS EN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [287-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDDKGFIIVE TNYRLYAYTS SPLQIAIIGL FANLRARFSN LVVGVITRDS IRRALMNGIA  60
   61 AEQIITYLTT HAHPQMRSNV PLLPPTLVDQ IYLWELEKNR LRATPGILFR DFLTDSGFDQ 120
  121 AVEYAKELGV LVWDSSLKRM FFITTTGAQP MIAYLKRRAV K

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle