YRC Public Data Repository - Protein Structure Prediction

Protein:	wsp1
Organism:	Schizosaccharomyces pombe
Length:	574 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for wsp1.

Description	E-value	Query Range	Subject Range
gi\|39579415, gi\|... - gi\|39579415\|emb\|CAE56721.1\| Hypothetical protein CBG24508 [Caenorhabditis briggsae], gi\|187040086\|em...	168.0	[0..87]	[570..34]
SYNJ1_RAT - Synaptojanin-1 OS=Rattus norvegicus GN=Synj1 PE=1 SV=3	167.0	[0..43]	[573..937]
gi\|70876557 - gi\|70876557\|gb\|EAN89996.1\| hypothetical protein, conserved [Trypanosoma cruzi] gi\|71421620 - gi\|71421620\|ref\|XP_811847.1\| hypothetical protein [Trypanosoma cruzi strain CL Brener]	161.0	[0..191]	[572..116]
gi\|31540577 - gi\|31540577\|gb\|AAP48996.1\| cellulosomal scaffoldin anchoring protein C; ScaC [Acetivibrio cellulolyt...	157.0	[0..101]	[572..461]
gi\|45185256, gi\|... - gi\|45185256\|ref\|NP_982973.1\| ABR027Cp [Ashbya gossypii ATCC 10895], gi\|44980914\|gb\|AAS50797.1\| ABR02... gi\|44980914 - gi\|44980914\|gb\|AAS50797.1\| ABR027Cp [Ashbya gossypii ATCC 10895]	156.0	[0..70]	[567..165]
SYNJ1 - synaptojanin 1	155.0	[0..43]	[547..937]
SLP1_CLOTM, SLAP... - (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein B) (S-layer protein 1), Cell sur...	151.0	[0..80]	[573..840]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	151.0	[0..80]	[573..1489]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPSSSITQE DKATIRKYIP KSTNKIIAAA VVKLYVAYPD PNKWNYTGLC GALVLSYDTT  60
   61 AKCCWFKLVD VVNNSGIIWD QELYQNMDYR QDRTFFHSFE LDKCLAGFSF ANETDAQKFY 120
  121 KKVLDKGCHP ESIENPVLSF ITRKGSSRHA PNNSNIQPPS AAPPVPGKEN YNAVGSKSPN 180
  181 EPELLNSLDP SLIDSLM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	2ifsA
Description:	No description for 2ifsA was found.

Predicted Domain #2

Region A:
Residues: [198-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMGISQDQIA ENADFVKAYL NESAGTPTST SAPPIPPSIP SSRPPERVPS LSAPAPPPIP  60
   61 PPSNGTVSSP PNSPPRPIAP VSMNPAINST SKPPLPPPSS RVSAAALAAN KKRPPPPPPP 120
  121 SRRNRGKPPI GNGSSNSSLP PPPPPPRSNA AGSIPLPPQG RSAPPPPPPR SAPSTGRQPP 180
  181 PLSSSRAVSN PPAPPPAIPG RSAPALPPLG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [408-574]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NASRTSTPPV PTPPSLPPSA PPSLPPSAPP SLPMGAPAAP PLPPSAPIAP PLPAGMPAAP  60
   61 PLPPAAPAPP PAPAPAPAAP VASIAELPQQ DGRANLMASI RASGGMDLLK SRKVSASPSV 120
  121 ASTKTSNPPV EAPPSNNLMD ALASALNQRK TKVAQSDEED EDDDEWD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits