YRC Public Data Repository - Protein Structure Prediction

Protein:	spo5
Organism:	Schizosaccharomyces pombe
Length:	567 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for spo5.

Description	E-value	Query Range	Subject Range
gi\|76689263 - gi\|76689263\|ref\|XP_880772.1\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...	186.0	[0..247]	[565..142]
gi\|73976773 - gi\|73976773\|ref\|XP_857215.1\| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4 isoform 1 ...	183.0	[0..247]	[565..142]
gi\|89266927 - gi\|89266927\|emb\|CAJ82281.1\| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen ...	178.0	[0..246]	[543..17]
gi\|74137801 - gi\|74137801\|dbj\|BAE24074.1\| unnamed protein product [Mus musculus]	178.0	[0..247]	[565..43]
gi\|114555675 - gi\|114555675\|ref\|XP_001171167.1\| PREDICTED: poly A binding protein, cytoplasmic 4 isoform 2 [Pan tro...	176.0	[0..247]	[565..142]

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Predicted Domain #1

Region A:
Residues: [1-289]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGIITPQKQ KQLMSSPSRD PLSTTELSTP TSQTTVDVND TKKSEGLDST IILLTPGTSP  60
   61 NATPGSSELG LSKKPNSIKN NTYSTAAQAA YLNRRAADQS TVMTTDPISY ANNNINNGTL 120
  121 PQQNAYYANS YYPSYYAQSQ AISNNRPGVS GFRPAFNSVA PCYGSQWQTH QSVHPYHVNN 180
  181 THQYLKPYVQ NVYPQMPSLN QPGLHIVNQP TYLAPVPSAT VPTNSVSLSM PSFSQGQKNI 240
  241 PAAINQEMSV GTTKENTNYL SQLVGLHPAI PPAIPSMFPM SHDNKKSNM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.30103
Match:	1m2vB
Description:	Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [290-481]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESTSRTRNVY IRGLPPNTSD ENLLLYTNRF GKVSSSKAII DMETNLCKGY GFACFEEEKS  60
   61 ALICISAMTL CGYQCSFAKE SFSARLQSLQ DTESTNLYIS NLPLHWNESD ISTLFKPSKI 120
  121 ISNRVLRDSK EQSRGVGFAR MQDRKTAEDI INKFNNFVLD PALPPLQIRF ADSTDQKKFK 180
  181 GQTQKRRLWR AR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.0
Match:	1l3kA
Description:	Nuclear ribonucleoprotein A1 (RNP A1, UP1)
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [482-567]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EYSVLTKGMT ANNAFSKVEE FANNSMPSKV GMYVPLESNT VYQHSPTYDT YGWQSMYPSY  60
   61 SVYPSNYENS RSTTPYHAHP ATSAAN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.807	d.58.56	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits