YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC2A9.11c
Organism:	Schizosaccharomyces pombe
Length:	395 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC2A9.11c.

Description	E-value	Query Range	Subject Range
gi\|32411937, gi\|... - gi\|32411937\|ref\|XP_326449.1\| hypothetical protein [Neurospora crassa], gi\|28923940\|gb\|EAA33100.1\| hy... gi\|85107258 - gi\|85107258\|ref\|XP_962336.1\| hypothetical protein NCU06594 [Neurospora crassa OR74A]	376.0	[0..9]	[395..86]
gi\|39952121, gi\|... - gi\|39952121\|ref\|XP_363777.1\| hypothetical protein MG01703.4 [Magnaporthe grisea 70-15], gb\|EAA56052....	374.0	[0..9]	[395..70]
gi\|42552655, gi\|... - gi\|46121767\|ref\|XP_385438.1\| hypothetical protein FG05262.1 [Gibberella zeae PH-1], gi\|42552655\|gb\|E...	359.0	[0..9]	[395..84]
gi\|88180091, gi\|... - gi\|88180091\|gb\|EAQ87559.1\| hypothetical protein CHGG_04178 [Chaetomium globosum CBS 148.51], gi\|1161...	344.0	[0..9]	[395..88]
gi\|169158443, gi... - gi\|24308382\|ref\|NP_443157.1\| leukocyte receptor cluster member 8 [Homo sapiens], gi\|23271985\|gb\|AAH2... gi\|123998545, gi... - gi\|157928829\|gb\|ABW03700.1\| leukocyte receptor cluster (LRC) member 8 [synthetic construct], gi\|1239...	341.0	[0..76]	[371..480]
gi\|114679033, gi... - gi\|114679033\|ref\|XP_001174973.1\| PREDICTED: leukocyte receptor cluster (LRC) member 8 isoform 5 [Pan...	340.0	[0..76]	[371..480]
gi\|109126046 - gi\|109126046\|ref\|XP_001084592.1\| PREDICTED: similar to leukocyte receptor cluster (LRC) member 8 [Ma...	335.0	[0..76]	[371..431]
gi\|169784241 - gi\|169784241\|ref\|XP_001826582.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83775327 - gi\|83775327\|dbj\|BAE65449.1\| unnamed protein product [Aspergillus oryzae]	328.0	[0..9]	[395..66]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKEHHSPWP DSLKEFIGRC IQDAEENSQP ELEDEVKLLI SRQYEMGNIW NVDWSSMNLE  60
   61 SLR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [64-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLTNAQNTII EDKKRKVEKP VSGNQFSLLS EEDEVDKKEK RRRRFENGSR SQNNAKSEEL  60
   61 KVNPENGAII GRSTELEKRY LRLTSAPDPD TVRPLPVLKQ TLELLKKK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [172-395]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WKEEKNYAYI CDQFKSLRQD LTVQRIQNEF SVLVYEIHAR IALEKGDVGE YNQCQTQLFH  60
   61 LYSFGIPGNT KEFLAYRILY MLFTKNRSEM NSLLANLKEE DKTNAAVTHA LEVRSAMATG 120
  121 DYYKFFHLYL VAPNMGGYLM DLFIERERVQ AMIMMCKAYR PSLTMEFLAN TLAFEEMEDC 180
  181 VNFFRSCNAV YDSKDPNRIL MKESTDRFEK CMKKHAVVDI KGQI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.63
Match:	1rz4A
Description:	Crystal Structure of Human eIF3k
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits