YRC Public Data Repository - Protein Structure Prediction

Protein:	vtc4
Organism:	Schizosaccharomyces pombe
Length:	721 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vtc4.

Description	E-value	Query Range	Subject Range
gi\|42545891, gi\|... - gi\|46107238\|ref\|XP_380678.1\| hypothetical protein FG00502.1 [Gibberella zeae PH-1], gi\|42545891\|gb\|E...	788.0	[0..1]	[717..1]
gi\|38109647, gi\|... - gi\|39958840\|ref\|XP_364446.1\| hypothetical protein MG09291.4 [Magnaporthe grisea 70-15], gb\|EAA55484....	781.0	[0..1]	[717..1]
gi\|32416676, gi\|... - gi\|32416676\|ref\|XP_328816.1\| hypothetical protein [Neurospora crassa], gi\|28925580\|gb\|EAA34604.1\| hy... gi\|85111234 - gi\|85111234\|ref\|XP_963840.1\| hypothetical protein [Neurospora crassa OR74A]	779.0	[0..1]	[716..39]
gi\|116180904, gi... - gi\|88185377\|gb\|EAQ92845.1\| hypothetical protein CHGG_01080 [Chaetomium globosum CBS 148.51], gi\|1161...	749.0	[0..1]	[717..1]
gi\|207343937 - gi\|207343937\|gb\|EDZ71240.1\| YJL012Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190409478 - gi\|190409478\|gb\|EDV12743.1\| vacuolar transporter chaperone 4 [Saccharomyces cerevisiae RM11-1a] gi\|151945066 - gi\|151945066\|gb\|EDN63317.1\| vacuolar transporter chaperone [Saccharomyces cerevisiae YJM789] VTC4_YEAST - Vacuolar transporter chaperone 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC4 PE... VTC4 - Vacuolar membrane polyphosphate polymerase; subunit of the vacuolar transporter chaperone (VTC) comp...	747.0	[0..1]	[721..1]
gi\|45201412, gi\|... - gi\|45201412\|ref\|NP_986982.1\| AGR316Cp [Ashbya gossypii ATCC 10895], gi\|44986346\|gb\|AAS54806.1\| AGR31... gi\|44986346 - gi\|44986346\|gb\|AAS54806.1\| AGR316Cp [Ashbya gossypii ATCC 10895]	728.0	[0..1]	[719..1]
gi\|238881520 - gi\|238881520\|gb\|EEQ45158.1\| vacuolar transporter chaperone 4 [Candida albicans WO-1] gi\|46432897, gi\|... - gi\|68489124\|ref\|XP_711583.1\| hypothetical protein CaO19.3363 [Candida albicans SC5314], gi\|68489079\|... orf19.10871, orf... - VTC4 CGDID:CAL0004171 Assembly 19, Contig19-10174 (4235, 2106) CDS, reverse complemented, translated...	728.0	[0..1]	[716..1]
gi\|50312119, gi\|... - gi\|50312119\|ref\|XP_456091.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645227\|emb\|CAG9879... gi\|49645227 - gi\|49645227\|emb\|CAG98799.1\| KLLA0F22627p [Kluyveromyces lactis]	722.0	[0..2]	[719..3]
gi\|49525971, gi\|... - gi\|50288467\|ref\|XP_446663.1\| unnamed protein product [Candida glabrata], gi\|49525971\|emb\|CAG59590.1\|... gi\|49525971 - gi\|49525971\|emb\|CAG59590.1\| unnamed protein product [Candida glabrata]	722.0	[0..1]	[718..1]
gi\|114188365, gi... - gi\|115443378\|ref\|XP_001218496.1\| vacuolar transporter chaperone 4 [Aspergillus terreus NIH2624], gi\|...	722.0	[0..1]	[720..1]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFGQLLKET LMYEYKYSYV NYDKLKKEIK RRNDQGGWSE EDESDFVELL EKELDKVYSF  60
   61 QKNKSAEVME RIRFCEEQTD EVVRRLDSDN PPNENDFAIL ETELTDIMAT VHDLAKFSEL 120
  121 NYTAFYKIIK KHDKHTGWIL KPVFAARLNA KPFFKEQYDL LVVKLSKLYD FVRTRGSPIK 180
  181 GDSAAGGTQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	53.102373
Match:	PF03105.10
Description:	No description for PF03105.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [190-474]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QNFVRQTTKY WVHPNNVTEL KIYILKHLPV LVFNPNKEFA REDAAITSIY YDNDDLDFYL  60
   61 GRLEKREGAE AIRLRWYGNM DNNNIFVERK THREDWTGEK SVKARFPLKE KYVNAFLRGD 120
  121 YTVEEAFAKM RKDGKKSLKE IESLERLAKE VQYTVLSRGM KPYVRSFYER TAFQLPGDAR 180
  181 VRISLDTNLS LIREDGPSRA GNNWRRMDIG IDYPFDQLPD EDIVRFPYAI LEVKLQTQFG 240
  241 QDPPEWVNNL VNSHLVEAVP KFSKFIHGVS TLFYDRVTLL PYWFP

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.53
Match:	2gfgA
Description:	No description for 2gfgA was found.

Predicted Domain #3

Region A:
Residues: [475-602]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QMDIDIRKPA THTFIQGRSQ SGTHSSSVSA NVLTDSENTP IHADGDNYVD EESRIGSSST  60
   61 RNDNSTFQTS DSFQELDERT NLLDISKRKG RDSFVAALNS RLKDIKDSFF LETVPKFEEP 120
  121 TEPTVIYE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [603-721]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKYVSPPGKR IYVPVRVEPK TYFALERTYL DYLRYSILMG SIGITLFSFA KTRSGILGAA  60
   61 SFTLVALFAI FYSTFLYLWR AVNIAKHNAV RYDDRFGPTA ICVITFAAIS ANVILNFNA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits