YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1773.02c
Organism:	Schizosaccharomyces pombe
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1773.02c.

Description	E-value	Query Range	Subject Range
gi\|51892064, gi\|... - gi\|51892064\|ref\|YP_074755.1\| 2-cys peroxiredoxin [Symbiobacterium thermophilum IAM 14863], gi\|518557...	170.0	[0..45]	[194..1]
gi\|21912927 - gi\|21912927\|emb\|CAC84143.2\| thioredoxin peroxidase [Nicotiana tabacum]	167.0	[0..16]	[194..48]
gi\|1076722 - gi\|1076722\|pir\|\|S49173 hypothetical protein - barley (fragment)	167.0	[0..30]	[194..2]
gi\|7339568 - gi\|7339568\|emb\|CAB82860.1\| 2-Cys-peroxiredoxin [Riccia fluitans]	166.0	[0..2]	[194..39]
BAS1B_ARATH - 2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2	165.0	[0..30]	[194..62]
gi\|62901916 - gi\|62901916\|gb\|AAY18909.1\| thioredoxin peroxidase 1-like [synthetic construct]	165.0	[0..41]	[194..25]
gi\|33865747, gi\|... - gi\|33865747\|ref\|NP_897306.1\| thioredoxin peroxidase [Synechococcus sp. WH 8102], gi\|33632917\|emb\|CAE...	164.0	[0..40]	[194..1]
gi\|11558242, gi\|... - gi\|11558244\|emb\|CAC17804.1\| peroxiredoxin [Phaseolus vulgaris], gi\|11558242\|emb\|CAC17803.1\| peroxire...	164.0	[0..16]	[194..37]

Back

Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAPRRSSRL AAKIANVLDS KGTIIPEAAP VMLKKPAKDE SVDSTIQVGD VIPDITLPDE  60
   61 DGTSIRLRDI TANKGLVIFA YPKASTPGCT KQGCGFRDNY PKIQASDYEV LGLSFDTSKA 120
  121 QKAFKDKQNF PYHLLSDPKG ELIKKLGAEK PGGGKLFRSH WIFEKGTGKC IVKEIDISPL 180
  181 VSVDKAFAVI TDSEP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.0
Match:	2a4vA
Description:	No description for 2a4vA was found.

Predicted functions:

Term	Confidence	Notes
antioxidant activity	3.66884588063322	bayes_pls_golite062009
peroxidase activity	3.43831566988273	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	3.43831566988273	bayes_pls_golite062009
glutathione peroxidase activity	2.56524997297011	bayes_pls_golite062009
peroxiredoxin activity	2.12777217096121	bayes_pls_golite062009
thioredoxin peroxidase activity	1.96134566495756	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.8187537496904	bayes_pls_golite062009
protein disulfide oxidoreductase activity	1.47769936616412	bayes_pls_golite062009
disulfide oxidoreductase activity	1.32811008894503	bayes_pls_golite062009
binding	1.25802922431343	bayes_pls_golite062009
selenium binding	1.1082524159827	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
transcription regulator activity	0.52671047749426	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: