YRC Public Data Repository - Protein Structure Prediction

Protein:	usp105
Organism:	Schizosaccharomyces pombe
Length:	612 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for usp105.

Description	E-value	Query Range	Subject Range
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	233.0	[0..8]	[564..517]
gi\|113475191, gi... - gi\|113475191\|ref\|YP_721252.1\| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...	232.0	[0..2]	[590..51]
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	217.0	[0..8]	[611..336]
gi\|56967372, gi\|... - gi\|62821820\|ref\|NP_001017359.1\| O-linked N-acetylglucosamine transferase isoform 1 [Danio rerio], gi...	211.0	[0..8]	[538..35]
gi\|76659271 - gi\|76659271\|ref\|XP_884992.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 7 [...	209.0	[0..8]	[538..35]
gi\|66793439, gi\|... - gi\|66793439\|ref\|NP_001019747.1\| UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase [Xe...	208.0	[0..8]	[538..25]
gi\|91079875 - gi\|91079875\|ref\|XP_967579.1\| PREDICTED: similar to CG10392-PB, isoform B [Tribolium castaneum]	207.0	[0..8]	[552..160]

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Predicted Domain #1

Region A:
Residues: [1-539]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYGDIYIAE ETEWDKYNRQ INKNPDDFDA WEGLVRASEH LEGGVGRNSS KQAINTLRSV  60
   61 YDRFLGKYPL LFGYWKKYAD FEFFVAGAEA SEHIYERGIA GIPHSVDLWT NYCAFKMETN 120
  121 GDANEVRELF MQGANMVGLD FLSHPFWDKY LEFEERQERP DNVFQLLERL IHIPLHQYAR 180
  181 YFERFVQVSQ SQPIQQLLPP DVLASIRADV TREPAKVVSA GSKQITVERG ELEIEREMRA 240
  241 RIYNIHLQIF QKVQLETAKR WTFESEIKRP YFHVKELDEA QLVNWRKYLD FEEVEGDFQR 300
  301 ICHLYERCLI TCALYDEFWF RYARWMSAQP DHLNDVSIIY ERASCIFASI SRPGIRVQYA 360
  361 LFEESQGNIA SAKAIYQSIL TQLPGNLEAV LGWVGLERRN APNYDLTNAH AVLRSIINEG 420
  421 KCNTGITEVL ITEDIKLVWK IEGDIELARN MFLQNAPALL DCRHFWISFL RFELEQPLNS 480
  481 KNYTEHHARV SNVMEMIRNK TRLPPRTIMD LTKLYMEYLC HQSNDPSVLQ EYLLIDRDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.522879
Match:	2ooeA
Description:	No description for 2ooeA was found.

Predicted functions:

Term	Confidence	Notes
RNA binding	2.76684454218635	bayes_pls_golite062009
binding	2.57186536498101	bayes_pls_golite062009
protein binding	1.83529176977066	bayes_pls_golite062009
transcription regulator activity	1.26149030245805	bayes_pls_golite062009
DNA binding	0.9531600253493	bayes_pls_golite062009
nucleic acid binding	0.93037889019021	bayes_pls_golite062009
signal sequence binding	0.8574224889202	bayes_pls_golite062009
transcription factor activity	0.374364600772076	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [540-612]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FGPFSVRESH WKKLDEGQDL KQVSTRLLST NGHPGISVNE AKIKSGESPY EKYYRLQGVV  60
   61 ETVTSGVAAN GSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.39794
Match:	1qvrA
Description:	Crystal Structure Analysis of ClpB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: