YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17A2.12
Organism:	Schizosaccharomyces pombe
Length:	897 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17A2.12.

Description	E-value	Query Range	Subject Range
YG42_SCHPO - Uncharacterized ATP-dependent helicase C23E6.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484... SPBC23E6.02 - ATP-dependent DNA helicase	344.0	[0..25]	[897..146]
gi\|1931638, gi\|2... - pir\|\|A86245 hypothetical protein [imported] - Arabidopsis thaliana, gi\|1931638\|gb\|AAB65473.1\| trans...	328.0	[0..97]	[893..400]
gi\|67538626, gi\|... - gi\|67538626\|ref\|XP_663087.1\| hypothetical protein AN5483.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	318.0	[0..198]	[893..423]
gi\|169785637 - gi\|169785637\|ref\|XP_001827279.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83776027 - gi\|83776027\|dbj\|BAE66146.1\| unnamed protein product [Aspergillus oryzae]	316.0	[0..246]	[895..259]
gi\|66848838, gi\|... - gi\|70992713\|ref\|XP_751205.1\| SWI/SNF family DNA-dependent ATPase Ris1 [Aspergillus fumigatus Af293],...	315.0	[0..183]	[893..478]
gi\|39940416, gi\|... - gi\|39940416\|ref\|XP_359745.1\| hypothetical protein MGG_05032 [Magnaporthe grisea 70-15], gb\|EAA52340....	314.0	[0..63]	[894..311]
SWR1_KLULA - Helicase SWR1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-... SWR1_KLULA - Helicase SWR1 OS=Kluyveromyces lactis GN=SWR1 PE=3 SV=1	309.0	[0..2]	[894..519]
gi\|42552706, gi\|... - gi\|46123053\|ref\|XP_386080.1\| hypothetical protein FG05904.1 [Gibberella zeae PH-1], gi\|42552706\|gb\|E... gi\|116090833 - gi\|116090833\|gb\|ABJ55998.1\| RING-11 protein [Gibberella zeae]	308.0	[0..8]	[893..198]
gi\|85014495, gi\|... - gi\|85014495\|ref\|XP_955743.1\| transcriptional activator [Encephalitozoon cuniculi GB-M1], gi\|19171437... gi\|19173311 - ref\|NP_597114.1\| GLOBAL TRANSCRIPTIONAL ACTIVATOR (SNF2/RAD54 family) [Encephalitozoon cuniculi]	308.0	[0..6]	[875..45]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLSAYPPQ STFQQLQNDE ELARRLQDEW NSSSPSSAPS SSSSQNQVEL DEQFARSLQN  60
   61 SQSSSYSLPP FDHPPSKNPT SSSLSTRKRW RQKRLWSFKN FPFRPPTRLT STPSNSSSLP 120
  121 SIPSSSSTPS ISSIPHTTSS VSNDIPS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [148-233]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLGSSDHPID LDNPEHLTPP SSFITAKQLS RLPTPLPPPS SSSLPTGTIS TNSFCPYERK  60
   61 VQPEHVTKEL HQLLQHNTPS PFDTID

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [234-487]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LQLKNEQVQS AGLLVSLLPH QVEGHAWMES MEQSSKCGGV MADDMGLGKT IQTIALLLTQ  60
   61 KSQDPLRKTN LIVVSVALLH QWAEELSTKV HPSKKLSVYI HHGSTKKNLD SYELSQYDVV 120
  121 LTTYSMLAYE MKQNDAFNNN NPATATPPPA CSLLETSWYR IVLDEAHTIR NRDTLAAKCC 180
  181 VKLDAKYRWC LSGTPIQNHI DEFYSLLKFL RIKPYCVWSL FAKDISRPLK SYRADIVEAA 240
  241 LKRLRILLAS TVFR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.154902
Match:	1z63A
Description:	Sulfolobus solfataricus SWI2/SNF2 ATPase core in complex with dsDNA
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [488-576]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTKETRVNNL PIVNLPPKTI RTVSVNLLPE ERALYNEQMS SAQSLVDNYF NNDHDLSRYG  60
   61 FLLVSLLRLR QFCCHPWLVK SSSLDNSFR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.75
Match:	1z5zA
Description:	Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #5

Region A:
Residues: [577-643]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRDSENVRNA CKSLDPLTIE RIATLQDFNC SVCLDPCLAP VFIIPCGHFT CQECMSMLVG  60
   61 QKYGSSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.154902
Match:	1fuuA
Description:	Initiation factor 4a
Matching Structure (courtesy of the PDB):

Predicted Domain #6

Region A:
Residues: [644-897]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSTIIAKCPM CRGNIVQDSL VDATILQAIH GPLNSLKQLE LDMNQSFSEQ ESIKLRWENR  60
   61 IDQMFTKKFG KRASEWKSSS KLNQARQTIL DIIGSKRNEK ILVYSQFSQY LCLVSHMLKL 120
  121 ENIRHVRYDG TMSANQRQKS LHSFNNDKDV LVMLVSLKAG SVGLNLTIAN HVILQEPFYN 180
  181 PSIEDQAIDR VHRLGQQKPV TVYRFITKDT IEERIVSVQR KKRQLVKEAL DSNENNPLSR 240
  241 LDKEELLYLF GLNS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.39794
Match:	1z5zA
Description:	Sulfolobus solfataricus SWI2/SNF2 ATPase C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits