YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC2C4.12c
Organism:	Schizosaccharomyces pombe
Length:	361 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC2C4.12c.

Description	E-value	Query Range	Subject Range
gi\|76096360, gi\|... - gi\|76096360\|ref\|NP_001028850.1\| tRNA phosphotransferase 1 isoform 1 [Homo sapiens], gi\|29123124\|gb\|A...	281.0	[0..10]	[237..4]
gi\|114638164 - gi\|114638164\|ref\|XP_508523.2\| PREDICTED: tRNA phosphotransferase 1 [Pan troglodytes]	273.0	[0..10]	[237..4]
gi\|109105607 - gi\|109105607\|ref\|XP_001115358.1\| PREDICTED: similar to tRNA phosphotransferase 1 isoform 1 [Macaca m...	272.0	[0..7]	[237..1]
gi\|157821705, gi... - gi\|157821705\|ref\|NP_001099801.1\| tRNA phosphotransferase 1 [Rattus norvegicus], gi\|149062237\|gb\|EDM1...	267.0	[0..10]	[238..4]
gi\|73983756 - gi\|73983756\|ref\|XP_540886.2\| PREDICTED: similar to tRNA splicing 2 phosphotransferase 1 [Canis famil...	258.0	[0..32]	[227..3]
gi\|163849264, gi... - gi\|76258043\|ref\|ZP_00765700.1\| Phosphotransferase KptA/Tpt1 [Chloroflexus aurantiacus J-10-fl], gi\|7...	256.0	[0..11]	[212..3]
gi\|34103736, gi\|... - gi\|34497880\|ref\|NP_902095.1\| hypothetical protein CV_2425 [Chromobacterium violaceum ATCC 12472], gi...	255.0	[0..9]	[218..8]
KPTA_BURS3 - Probable RNA 2'-phosphotransferase OS=Burkholderia sp. (strain 383) GN=kptA PE=3 SV=1 KPTA_BURL3 - Probable RNA 2'-phosphotransferase OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 ...	253.0	[0..29]	[215..8]
gi\|86825689 - gi\|86825689\|gb\|AAI03211.2\| TRPT1 protein [Bos taurus]	251.0	[0..31]	[237..10]
KPTA_THEAC - Probable RNA 2'-phosphotransferase OS=Thermoplasma acidophilum GN=kptA PE=3 SV=2 KPTA_THEAC - Probable RNA 2'-phosphotransferase OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9...	251.0	[0..14]	[241..12]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSHELIEES NNSGTPATKS SSKPTKKIRP RNDLVHYSKA LSKVLRHTAK ANGLQIREDG  60
   61 YIEVDSILKL PQFRGMGMEL LLSIVKGNDK KRFTMEEVEG VLYIRANQGH SIKAVQVPMA 120
  121 RIDNASSIPK VVHGTKKELW PVISKQGLSR MKRNHIHCAT GLYGDPGVIS GIRKSCTLYI 180
  181 YIDSAKAMQD GVEFYRSENG VILTEGVNGL LSSKYFSRVE TSDGEVLLDA KA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.09691
Match:	1wfxA
Description:	Crystal Structure of APE0204 from Aeropyrum pernix
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [233-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPKNNRSDES DQSDPESIDP FCDNLQALSM HELELLEEKH SNFGYSEGII KGKMQVAQSG  60
   61 FDDGFKHGSR LGFQMGKTIG TLKAKLYIFE ENEQMEILKQ ELDRLQESAE FHIFVANHKE 120
  121 EILKCIREK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits