YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17H9.12c
Organism:	Schizosaccharomyces pombe
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17H9.12c.

Description	E-value	Query Range	Subject Range
gi\|72609073, gi\|... - gi\|74017897\|ref\|ZP_00688519.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bindi...	195.0	[0..1]	[256..69]
gi\|12539420 - gi\|12539420\|dbj\|BAB21465.1\| electron transfer component of chlorobenzoate 1,2-dioxygenase [Burkholde...	192.0	[0..1]	[256..69]
gi\|116652617, gi... - gi\|67666317\|ref\|ZP_00463567.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bindi... gi\|67092364, gi\|... - gi\|67660019\|ref\|ZP_00457373.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bindi...	191.0	[0..1]	[256..69]
gi\|67154158, gi\|... - gi\|67154158\|ref\|ZP_00415903.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bindi... gi\|67154158, gi\|... - gi\|67154158\|ref\|ZP_00415903.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bindi...	190.0	[0..1]	[256..68]
gi\|11878086 - gi\|11878086\|gb\|AAG40793.1\| Tbc1F monooxygenase [Burkholderia cepacia]	190.0	[0..1]	[256..64]
gi\|72121571, gi\|... - gi\|73538234\|ref\|YP_298601.1\| benzoate 1,2-dioxygenase ferredoxin reductase subunit [Ralstonia eutrop...	189.0	[0..1]	[256..69]
gi\|78060162, gi\|... - gi\|78060162\|ref\|YP_366737.1\| benzoate 1,2-dioxygenase ferredoxin reductase subunit [Burkholderia sp....	189.0	[0..1]	[256..69]
gi\|51710768 - gi\|51710768\|gb\|AAU09454.1\| benzoate 1,2-dioxygenase electron transfer component [Acinetobacter radio...	188.0	[0..1]	[256..70]
gi\|134291243, gi... - gi\|67543060\|ref\|ZP_00420994.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bindi...	187.0	[0..1]	[256..69]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTYRKLP KILAAGLAIG CAGGYYAYKN SNKPPGLNPE IYAPFTVNKI TELTSDASLF  60
   61 SLVPQSPSEH LTTLEPIAKV TIRDPSMQVQ RPYTPLYLDA NELKFFIRKY EEGPVSSYIH 120
  121 SKKEGDTIEL RGPFKTTKLD CTKYPRIVAI VAGTGIAPIY QLAQSVKSPV DIVYCSRPGQ 180
  181 PPLLKEELEK ECPNVRVKSV QNRLVNIHDI LDWDNVTVPL KDTLCIVCGS QKFVSTIAGP 240
  241 KADYGARQGE VKGLLSNNPF GKVWKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	1krhA
Description:	Benzoate dioxygenase reductase; Benzoate dioxygenase reductase, N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.21078243979773	bayes_pls_golite062009
ferredoxin-NADP+ reductase activity	1.46342400843015	bayes_pls_golite062009
ferredoxin reductase activity	1.46342400843015	bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor	1.46342400843015	bayes_pls_golite062009
catalytic activity	1.45374095556065	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, heme protein as acceptor	1.42015329094031	bayes_pls_golite062009
cytochrome-b5 reductase activity	1.03329517603164	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	0.90349352746963	bayes_pls_golite062009
binding	0.778669708390896	bayes_pls_golite062009
riboflavin synthase activity	0.380537461428523	bayes_pls_golite062009
coenzyme binding	0.377407140593246	bayes_pls_golite062009
transferase activity	0.00498326987177106	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: