YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC637.09
Organism:	Schizosaccharomyces pombe
Length:	623 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC637.09.

Description	E-value	Query Range	Subject Range
gi\|85117960 - gi\|85117960\|ref\|XP_965348.1\| hypothetical protein NCU02961 [Neurospora crassa OR74A] gi\|38566953, gi\|... - gi\|38566953\|emb\|CAE76255.1\| related to ribonuclease H [Neurospora crassa], gi\|32419411\|ref\|XP_330149...	459.0	[0..55]	[623..71]
gi\|46108570, gi\|... - gi\|46108570\|ref\|XP_381343.1\| hypothetical protein FG01167.1 [Gibberella zeae PH-1], gi\|42545790\|gb\|E...	446.0	[0..9]	[615..28]
gi\|145021652, gi... - gi\|39941984\|ref\|XP_360529.1\| hypothetical protein MGG_10841 [Magnaporthe grisea 70-15], gb\|EAA47030....	440.0	[0..13]	[623..16]
gi\|67901158, gi\|... - gi\|67901158\|ref\|XP_680835.1\| hypothetical protein AN7566.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	431.0	[0..35]	[623..52]
gi\|71002294, gi\|... - gi\|71002294\|ref\|XP_755828.1\| exonuclease [Aspergillus fumigatus Af293], gi\|66853466\|gb\|EAL93790.1\| e... gi\|159129885 - gi\|159129885\|gb\|EDP54999.1\| exonuclease, putative [Aspergillus fumigatus A1163]	385.0	[0..24]	[623..41]
gi\|116192355, gi... - gi\|88181808\|gb\|EAQ89276.1\| hypothetical protein CHGG_05895 [Chaetomium globosum CBS 148.51], gi\|1161...	380.0	[0..55]	[623..48]
gi\|83770458 - gi\|83770458\|dbj\|BAE60591.1\| unnamed protein product [Aspergillus oryzae] gi\|169763060 - gi\|169763060\|ref\|XP_001727430.1\| hypothetical protein [Aspergillus oryzae RIB40]	379.0	[0..39]	[623..43]
gi\|114190399, gi... - gi\|115401740\|ref\|XP_001216458.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	376.0	[0..33]	[623..183]
DPO3_BACSU - DNA polymerase III polC-type OS=Bacillus subtilis GN=polC PE=1 SV=2 gi\|221318783 - gi\|221318783\|ref\|ZP_03600077.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. JH64... gi\|221313860 - gi\|221313860\|ref\|ZP_03595665.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. NCIB... gi\|221323055 - gi\|221323055\|ref\|ZP_03604349.1\| DNA polymerase III PolC [Bacillus subtilis subsp. subtilis str. SMY] DPO3_BACSU - DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168) GN=polC PE=1 SV=2	348.0	[0..3]	[584..162]
DPO3_BACHD - DNA polymerase III polC-type OS=Bacillus halodurans GN=polC PE=3 SV=1 DPO3_BACHD - DNA polymerase III PolC-type OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / J...	346.0	[0..4]	[573..142]

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Predicted Domain #1

Region A:
Residues: [1-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGELQDGITQ EDSIEKKSKN VASHGEKRKV KRKKEDLSMD GSNDGVKDSP DSNDDSQSKK  60
   61 KKKKKLKKSQ QPLNEENYPR LQTTENNLQK PLKISDLQEL VFWCLADGQA PSWVLVRNKQ 120
  121 MIHRAVILLV PGLEPSQFGF QPVRGNKHSF LLPNLLNENG PIQLPDFCEV FDRAWPTRSP 180
  181 GDRFRVFSPV NAFLQSPLSN EQKKKRDKET RAMASFSKPS DYLMSYESFI EDEYPLHPTV 240
  241 MKGEEVTQPS GWVASAGDFH S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [262-350]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPINPKILAI DCEMVRTENG LEIARVTIVD MKSEVIYDEF VKPESPVTDY VTQYSGITEE  60
   61 KLRNVTTVLS DVQSYLKKTV DNNTVLLGH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.045757
Match:	1wljA
Description:	human ISG20
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [351-623]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLNSDLNCLK FTHPHIIDTA NIYNHTRGPP SKPSLKWLAT KWLRREIQKA GALGHDSAED  60
   61 ALACVDLLKL KVKNGPAFGL FNQDFESIFH RLSRQQPTPL IGAIADYGNP ESCIGKAAHK 120
  121 SVSCANDDEV VSAVVSLSDM HNFVWGRFRE LEHAAMWNAN RNTKQENNSD TDTENDSVEE 180
  181 DQVTSYSSAL ERFNRRIRLL YDSLPKGSLL LLYTGTGNPI EMSKLNAIRQ QFRKEYQTKK 240
  241 WDELSVKWTD EENMKYISAV ENTRNGLSFM TIK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.154902
Match:	1qtmA
Description:	Exonuclease domain of prokaryotic DNA polymerase; DNA polymerase I (Klenow fragment)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits